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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGGTGTAGAAGAAAGTGAATACATGCAGTGGTACATGAAAATTACACGTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctctgtttgattgactaatgatattatttgtattacaaagtaacttgccattattgattgccttcaattttttttgtag

Basic information

species Vitis vinifera
transcript Vv11s0016g00240.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045083|gb|FQ449337.1|FQ449337
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAGTTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351039630|gb|FQ461497.1|FQ461497
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351044880|gb|FQ449134.1|FQ449134
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351031831|gb|FQ460088.1|FQ460088
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGGTACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|349808887|gb|FQ406737.1|FQ406737
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351012093|gb|FQ429899.1|FQ429899
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351013159|gb|FQ424864.1|FQ424864
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|352790261|gb|FQ481460.1|FQ481460
EST:     GTAGATTTGTAGGAAGGCTTATTCCTTTATCATCAGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|351019327|gb|FQ429487.1|FQ429487
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCAAAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
EST: gi|30134406|gb|CB919744.1|CB919744
EST:     GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATG                         CATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA
genomic: GTAGATTTGTAGGAAGGCTTATACCTTTATCATCGGAATTTCAGAGAATGgtaaggctct ... ttttttgtagCATGCTGCATTAAGGGATATTGCACACTTGGCTGATACAGTCTCCACACAA