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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaagattcagccccatttcttaattgggtctatggttttcaatcattttccaatcaaaattgtagctgaaacatgaaactaatacaattctggaaattcgtcacag

Basic information

species Vitis vinifera
transcript Vv10s0116g01200.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G871347_T02 (Zea mays), 5'ss of exon 4
CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaagattcagccccatttcttaattgggtctatggttttcaatcattttccaatcaaaattgtagctgaaacatgaaactaatacaattctggaaattcgtcacag-------
||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||    |||||||| || || || || || |||   || |||| |    ||    | |       |||  || ||   |   |    ||  | | ||    |    || |       |||   |   ||||| |       
CCAGTGGCGCAAGTACGGGCAGAAGATGGCCAAGGGCAACCCATGCCCGCGAGCCTACTACCGGTGCACCATGGCCAACGGCTGCCCCGTGCGGAAGCAGgtgagagagagacccagtc---aac---gccacgcaccttccttccttcggcttgcgtgttttgaccggacctctccggctgactttga-ctgaccagctgtcacggcatgcag

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G00820.1 (Glycine max), 5'ss of exon 5
CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaag--------attcagc--cccatttcttaattgggtctatggttttcaatcattttccaatcaaaattgtagctgaaacatgaaactaatacaattctggaaattcgtcacag---
||||||| | || ||||| || |||||||| |||||||| |||||||| ||||| |||||| |||| || ||||||||||| |||||||||||||||||||| ||        ||| | |  | ||| |  ||||       ||  || | || | || || | | |  ||||| |||||| | | | |     | | |||| |   |  || |      
CCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtcagtttttctgattgatcagcgcatataataataataataattattattaacc-ttatctactaagcattgtggctgaagc-taatatattgatatttcttggtttgtgttaatatag

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G11680.1 (Glycine max), 5'ss of exon 5
CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaagattcagccccatttcttaattgggtctatggttttcaatcattttccaatcaa--aattgtagctgaaacatgaaactaatacaattctggaaattcgtcacag----------------------
||||||| | || ||||| || |||||||| |||||||| |||||||| ||||| |||||| |||| || ||||||||||| |||||||||||||||||||| || ||    |  |||  | ||        ||   |   ||| | | || | ||||  |     |    || ||  | | |  |     |   |  | |||  |                         
CCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagtttt--tctgattgatcaacgcatataattaataataattagtatctattcaagtatcaacaatataagcaatatattgctgtggctaaagctaatcgatattaatttcgtggtttgtttatatag

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G39250.1 (Glycine max), 5'ss of exon 5
CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaagattcagccccatttcttaattgggtctatggttttcaatcattttccaatcaaaattgtagctgaaacatgaaactaataca-attctggaaattcgt---cacag
||||||||| || ||||| || || ||||| ||||| ||||| || || ||||| |||||| |||| |||||||||||||| |||||||||||||||||||| || ||       ||||    ||||  || |||  | | |||    | || || | |||  ||   ||||  | ||||| | |   || ||||   ||  |    | ||
CCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACCATGGCAGTTGGTTGCCCAGTTCGCAAACAAgtgagttt--attaaattttcggattga-tcaatg--tattaattgaatgcctatgacaatattattagaaa--ttaaacttacatgcatactggtggtttatatatatag

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G01490.1 (Glycine max), 5'ss of exon 5
CCAATGGCGCAAGTATGGGCAGAAAATGGCGAAGGGGAACCCATGCCCGCGAGCCTACTACCGATGTACCATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtaagatt--cagccccatttcttaattgg---gtctatggttttcaatcattttccaatcaaaattgtagctga-aacatgaaactaataca-----attctggaaattcgt---cacag
||||||||| || ||||| || || ||||| ||||| ||||| || || ||||| |||||| |||| || |||||||||||||||||||||||||||||||| || ||   |       |  |||||||     | |||   ||  |  | |||  |||| | |||  ||| |   |  || |||||   |       ||  |||   ||  |    | ||
CCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGCTGCCCAGTTCGCAAACAAgtgagtttattaaattttctgattaattgatcaatgtattaattgaatgcctttgacaat-ataatattagttatcagaattaaacttgcatgcatgcatattggtggtttatatatatag