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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgtttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag

Basic information

species Vitis vinifera
transcript Vv10s0116g00810.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 6
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaa-attttcttgaaaggtgtttgttgaaatatattgggctttagctttttcccctttttattc-catttgaaattgttgcctgttcatgactgtacatgtag
||||||||||| || ||||| || || || || |||||||| |||||||||||||||||||| | ||| ||         |   | |||   ||      | ||||||  | |   ||  ||   | |||   | | |  || ||  ||| |                                 
GTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGGgtttgcctctcctttattatattgcattcttgaatatttgttccattcacttaagcaa-atcttagacacgtcattgttttcatgtag-------------------------------

upper sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 6
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgt-ttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag
|||||||||||  |||| || || || ||||||||| | || |||||||||||||||||||||||||||| || ||   |||    |||  |   || ||    | |||  || |  ||   ||||   ||||  | | ||| | ||  |  |    |                          
GTCATGATGCGTCTATTCAGTCCCCGGAAAACGACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatc---ctggtcctttcttgagaacgtacacttttgtgatttcctgctatttaatgttttatcatgtttctgcctgtctatgcag--------------------------

upper sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgtttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag
|||||||||||  |||| || || || ||||| ||| | || |||||||||||||||||||||||||||| || ||    | |    |||||||| |             || ||           |  |||     ||| || | |||  |  || |  | ||||  || ||||  ||| ||
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcc----tttcttgaga-------------atgta-----------cacttttgtgatttcatgctattcaatcttttgtcatgtttctggctgtctatgcag

upper sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G45160.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgtttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag
|||||| |||| || |||||||| || ||||| || || || ||||| |||||||||||||||||||| |||  |     ||||| |     |||    || ||||      |||||     |||| ||||   | ||| |  |                                       
GTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAGgtttggtttt----tgcaattgagtatgattcttgattgtgagttcatatt---tcttagattttctgcttttgttcttag------------------------------------