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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtactgatcaatgtctttcccctaactttatgttttgaacaaaaaatttcaatttccatatccatgaaaacgttcttatttctgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G45070.1 (Glycine max), 5'ss of exon 5
TCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtactgatcaatgtc----tttccccta-----------acttta----tgttttgaacaaaaaatttcaatttccatatccatga-----aaacgttcttatttctgcag------------------------------------------------
||||||||||| |||||||| ||||||||| || |||||| ||||||| |||||||| ||||| ||| | ||||| |||||||| |||||||||||||||||||  ||   | ||    ||||  |||           || ||     | || |  ||| | |||  |  |  ||    ||| ||     |||  |   | | |  |||                                                 
TCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAGTGgtacgcatttttctccccttttcttctacgccatgcatgaccttgctggtattgttgacagataataactttaccctcgaccaggacaaaaaaatatatctttcttagcacctcatataattaacaaagtgtttttgttttttttttttgtgtgtttag

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 5
TCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtac----------------tgatcaatgtctttc----ccctaactttatgttttgaacaaaaaatttcaatttccatatccatgaaaa-cgttcttatttctgcag----------------------------------------
 |||||||||| |||||||| ||||||||| || |||||  ||||||| |||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||                | ||  || |  |||    || | ||    |||| |  ||| | || || |   || |     |  ||||   |   | | |  |||                                         
CCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGgtacgcatttttctccccttttatatattttcttctacaccatgacccggtgttgttgacagataactttaccctcgaccaggacaaaaaatatatctttgttagcacctcttaattaacaaagtgttttttgcttttttgtgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737209|gb|EV241323.1|EV241323
EST:     AAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTG                         ATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAAC
genomic: AAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtactgatca ... atttctgcagATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAAC