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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtttaaaatagcctgttttctttaacgaagtttatatttctatttcctgaaataaattattttttttttccttgtgacataag

Basic information

species Vitis vinifera
transcript Vv10s0116g00490.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 5
TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtt--taaaatagcctgttttctttaacgaagt--ttatatttctatttcctgaaataaattattttttttttccttgtgacataag
|||||| || || || || ||  ||||||||||||| ||||| ||||| || ||||| || || ||  ||||||| |||||||| ||| | |||||||||||| ||||  |  |   |    |         | |  ||  | |  | |||| |   || ||||||    || ||     || | | |||    ||  
TGTTCGGGCTTCATCCAAGGGTTTGACACTTGAGCTTTGTCGGTGGATTGGCAAAGAGCCTGTAAAGGCAATTTTATTTGAGAAGATGAGAGATACAATGgtacaatatttcataccaggccattagagcagcatgcacacattgatcatatgtaccttgcctgaatagtataatcacacttattcctgtt-tgtag-

upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G29520.1 (Glycine max), 5'ss of exon 2
TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtttaaaatagcct-gttttc--tttaacgaagtttatatttctatttcctgaaataaattattttttttttccttgtgacataag
|||||||||||||||||||||  |||| ||||| || || |||||||| || |||||    || ||||||||||||||||||| |||| | || |||||||||   ||||    |    ||   | ||| |   ||| |     | | |  | ||   |    ||||     | |   |||||||   |  |   ||
TGTTCGTGCATCCTCTAAAGGGTTGACTCTTGAACTTTGCCGTTGGATTGGTAAAGATAGTGTAAAATCAATTTTGTTTGAGACAATGAGAGACACAATGgtaagctaaactagttgtctatttttgttgttgttttgatttgttatgttctcctccatatccaaatcttagagtacctttttccccatttctgtag

upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ15655 (Selaginella moellendorffii), 5'ss of exon 5
TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtttaaaatagcctgttttctttaacgaagtttatatttctatttcctgaaataaattattttttttttccttgtgacataag
|||  | || ||  | || ||||| ||  | ||| | || || |||||||| |||||| | || ||||| ||| | |||||||||||||| ||||||||||||  || ||| |          ||||| |  ||    |   |||  |  |                                           
TGTAAGAGCTTCGGCCAAGGGACTAACTATAGAGTTATGCCGGTGGATAGGAAAAGACTCCGTCAAATCCATTCTCTTTGAGAAAATGCGAGATACAATGgta--atcaatctcc-------tctgttgtagttgctaatacttacgtcacag-----------------------------------------

upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ11209 (Selaginella moellendorffii), 5'ss of exon 5
TGTTCGTGCATCCTCTAAAGGACTGACACTTGAGCTCTGTCGTTGGATAGGGAAAGACCCAGTGAAATCAATTTTGTTTGAGAAAATGCGGGATACAATGgtataataaatgtttaaaatagcctgttttctttaacgaagtttatatttctatttcctgaaataaattattttttttttccttgtgacataag
|||  | || ||  | || ||||| ||| | ||| | || || |||||||| |||||| | || ||||| ||| | |||||||||||||| ||||||||||||  || ||| |          ||||| |  ||    |   |||  |  |                                           
TGTAAGAGCTTCGGCCAAGGGACTAACAATAGAGTTATGCCGGTGGATAGGAAAAGACTCCGTCAAATCCATTCTCTTTGAGAAAATGCGAGATACAATGgta--atcaatctcc-------tctgttgtagtttctaatacttaagtcgcag-----------------------------------------