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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCTGGCGAGCAACAATTTAACTGGGAGTTTTCCGTATTCCATTTCTACCATGGTTTCTCTTAATTATTTgtgagtgatttgtcttgaatgctattgattttgaatttcctattatgttttatttacatgattcagttataatttggaagtgctattgcctgatgctaaaactcttggttttag

Basic information

species Vitis vinifera
transcript Vv10s0116g00100.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 5
AAACCTGGCGAGCAACAATTTAACTGGGAGTTTTCCGTATTCCATTTCTACCATGGTTTCTCTTAATTATTTgtgagtgatttgtcttgaatgctattgattttgaatttcctattatgttttatttacatgattcagttataatttggaagtgct-attgcctgatgctaaaactcttggttttag
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GAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGCCATGGTTTCACTCAATTATTTgtaagt---tttttttgaatgc-acacatttt--------tatttcataatattca----atttgataatacattggagccacttactgtgtttccatgtggtttttag------