Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacctctgcttaaactctaggccagtgttttcccatgagggtagtttttcattttctgtagttctccttttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G047267_T01 (Zea mays), 5'ss of exon 1
---CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacctctgcttaaactctaggccagtgttttccc-atgagggtagtttttcattttctgtagttctccttttctcag-----------------------------------------------------
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CATCTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTGGAGTTACAGAgtatgt--ctatatttta-ctaaacccccttgttttctttgtacctcaaacagttcttttgtcatgtccattttattgtgaagatttttgccccttgttggcaattgtcattattttctgttttcttatgagcag
upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G039711_T01 (Zea mays), 5'ss of exon 5
CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatat--acctctgcttaaactctaggccagtgttttcccatgagggtagtttttcattttctgtagttctccttttctcag-------------------------------------
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CTTCCGGAGTTCTGTTCACGGGACAGCTCACTTGTAGTCAAAGAAATCTTTGGAGTTACAGAgtatgtctatattttactatatcccccttgttttctttgcacctcaaacagttctttttattgtgaagatttttgccccttgttggtaattgtcattattttctgttttcttgtgcgcag
upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA0048S00270.1 (Glycine max), 5'ss of exon 5
CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacc-tctgcttaaactctaggccagt---gttttcccatgagggtagtttttcattttctgtagttctccttt----tctcag-----------
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CTGCCAGAGTTTTGTTCAAGAGATAGCTCCTTAGTTGTCAAGGAAATCTTCGGTGTTACAGAgtatgttctatatgcttgctttcttgtcaaacttgatatctctatcagcattcttattatgtaaatatagcttgcattagagatgtcaagatggctacaa
upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G00210.1 (Glycine max), 5'ss of exon 5
CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacc-tctgcttaaactctaggccagtgttttcccatgagggtagtttttcattttctgtagttctcctt----ttctcag----------------------------------------
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CTGCCAGAGTTTTGTTCAAGAGATACCTCCTTAGTTGTCAAGGAAATCTTCGGAGTTACAGAgtatgttctatatgcttgctttcttgacaaacatgatatctctatccgcattcttatgtaaatatagctcgcattagagatgtcaagatggctaagaaagaatgttttcttggttttctttctcag
upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G08540.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatat-acctctgcttaaactctaggccagtgttt-tcccatgagggtagtttttcattttctgtagttctccttttctcag
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CTTCCTGACTTCTGCTCAAAAGACAACTCCTTAATCGTCAAGGAAATATTCGGCGTTACAGAgtatgttaactttattcttatgcttttacaatgttccttttacttgaccatctctacaaaacatttcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691664|gb|EC981912.1|EC981912EST: TGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGA TGAAGATGCAGAGAAGATTCGTATGCACACTCTTTCTGAGGCCGGGGCTGT
genomic: TGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacct ... cttttctcagTGAAGATGCAGAGAAGATTCGTATGCACACTCTTTCTGAGGCCGGGGCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTTGGCGTTACAGAgtatatacctctgcttaaactctaggccagtgttttcccatgagggtagtttttcattttctgtagttctccttttctcag
- - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - AAGGAA