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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGgtttacttcacatctttttgtcccctttgtttatgagatacgtgttaccaattggttagagctgttagactactatggtgatattcctacagcatggttg...

Basic information

species Vitis vinifera
transcript Vv10s0003g05720.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G375904_T01 (Zea mays), 5'ss of exon 4
TAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGgtttacttcacatctttttgtcccctttgtttatgagatacgtgttaccaattggttagagctgttagactac-tatggtgatattcctacagcatggttg
| |||||||| || ||  | || || ||||| || || |||||| |||   | || || |||||||| |||||||||||||||||||||||  | ||  |||    | |   | | | | |    |||  |    | | |       |||  || ||  |    ||| |  |  |||    || |||||   |   |    
TTATGCGCAAAGACACACTAACAGAAGATGAAGCTAGATTTTATATTGCAGAAACTGTGCTTGCCATCGAGTCTATTCACAAGCACAACTATGTTCATCGgtaccatactagtgtctctatgtttttttgtcccaaaaaa------gccagatgattctataatttaaataatgtatccctatgttccttttgtcag----

upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 5
TAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGgtttac----------ttcacatctttttgtcccctttgtttatgagat---acgtgttaccaattggttagagctgttagactactatggtgat------attcctacagcatggttg--------------------------------------------------------------
| ||||| |||||||||||    || |||||| |  |||||||||||| ||||||| | || || ||||||||||| || ||||| || ||| |||||||||||            ||   | |||||  |    ||  ||| |    |    | | ||||       |||       |||| |  |||   | |       |||||||||      |                                                               
TGATGCGAAAGGATACCTTACGGGAAGATGAGACTCGGTTTTATGTTGCGCAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGgtttgaacaactggcatttgaagcttttcatattgttcttttttccatttttgcatcttacttgacatttactatcactagaatcatatcaagcttccggatttcctacagtgcttgtaaattagctttcagttgatacgtggtgataatttaactctagtttcttcctttgcttttgtag

upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ16108 (Selaginella moellendorffii), 5'ss of exon 4
TAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGgt-ttacttcacatctttttgtcccctttgtttatgagatacgtgttaccaattggttagagctgttagactactatggtgatattcctacagcatggttg
| ||||| ||||||||  |||| ||| | || || | ||||||  ||| | |  | || || || |||||||| |||||||||||||| ||||| ||||||| ||||||||  |  | |||||   |||| || ||   |   ||  || | |  ||  |                                         
TGATGCGGAAGGATACGCTGACAGAGAACGAAGCGAAGTTTTACATTGCGGAAGCGGTTCTAGCTATTGAGTCCATTCACAAGCACAAATACATTCACAGgtgttacttcaacttctattgtct--tttgattgtgcttttgctgacacgattccgtcggcag--------------------------------------