Sequence
atgc intronic sequence ATGC exonic sequenceGAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G13070.1 (Glycine max), 5'ss of exon 3
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattg----tttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt
||||||||||||||||||||||||||||||||| | |||| |||||| | ||||| ||| ||| || ||| ||||| |||| ||| ||||||| |||||||| || || ||| || |||| | | |||| || | ||| | | | | || ||| ||| | || | |
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGgttagatatgttttcatctaactttacactgtacatctaccattcttagcatcatt-tgacttgttttttaaatctat-tatatattatacttatggtcacc--
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G13700.1 (Glycine max), 5'ss of exon 5
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaa-----agaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt
||||| |||||||||||||||||||||| |||| ||||||||||||| || || ||| ||| || | | |||||| |||| | |||||| ||||||| | | | | |||| || ||||| | | ||| || | || | | | | || ||| | || | | |
GAAATGCTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAATTCATACGgttagacatgttttcacatacacaatgcaccgtatatctgctgttcttatcatcttt-tggttcattttgaaaa---atttatcttgtcaacatgaattaggta-
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G29940.1 (Glycine max), 5'ss of exon 3
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttat-gcactctttgcttgacgt--
||||||||||||||||||||||||||||||||| | |||| |||||| ||||| ||| | | || |||| |||||| |||| || ||||||| |||||||| || | || || | || |||| | | | | | | | | || || ||| | | | || ||
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCCGAAGGATATACAAAACCTGGATCAGATGCCAGTCATGAGCAGCGTGCGAAATTCATCCGgttagatatgttttcatctaataactttacacctacatctatcattcttaacatcattttgctt---gttttataaatctattatatgttatatttatggtca
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G02830.1 (Glycine max), 5'ss of exon 5
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaa-----agaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt
||||| ||||||||||||||||||||| |||| ||||||||||||| || || ||| ||| || | | |||||| |||| | ||||| ||||||| | | | | ||| || |||| | | ||| | | | || | || | | ||| | ||| | | |
GAAATGTTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGgttagacatgttttcatatacacaatgcactgtatatcttccgttcttatcat--cttttggttcattttgaaat---tttatcttgtcaccatgaagtaggtaa
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G21160.4 (Arabidopsis thaliana), 5'ss of exon 4
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt
||||| | ||||| ||||||||||| ||||| |||||||||||||| | | |||||| |||| || | || ||||| |||| ||||| ||||| |||| | | || || | | | || | | ||| || || ||| | | || | || || | | |||||| || |
GAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTAAGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGgtaggttacaaaaacccgataagatagtgtatat--accttcattaatagtt-----------tggtgaaatattcatctca--aatctttgtttcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719936|gb|FC066718.1|FC066718EST: ACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAC GTCAAAATATGAGCTTCAAGAATTTTTGAAACCTAGCTTGCGGATTGCTTC
genomic: ACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaa ... ttttgtgcagGTCAAAATATGAGCTTCAAGAATTTTTGAAACCTAGCTTGCGGATTGCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCTGAAGGAGTCACAAAGCCTAAACCTAATTCCAGCCATGAGGAGCGAATGAGATTCATCAGgttagatgaaagaaaattgtttcaccataaatctggatctttatgcatggttgtaactctatatagagacacatgtatttatgcactctttgcttgacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaca