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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag

Basic information

species Vitis vinifera
transcript Vv10s0003g04670.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g43930.2 (Oryza sativa), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag
|||||||||||||| ||||||||| | |||||||| | ||| |||||||| |||||||||||||| || ||||| ||||| || || ||||| ||||||  |||  |   |  |  | || |      |   |   |  || ||   | | |        ||  ||  | ||
CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGTAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGgta--tgttgtttttcatcatcacacagcccaatgtctcca--ttcggcagacactcctaatagactactgcatag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttt-tactctattgtactg--cgttagttttggtg-taaagtatgtggtaa-catctttacag
|||||||||||||| ||||||||| | |||||||| | ||| || ||||| |||||||||||||| || ||||| ||||| || || ||||| ||||||  ||   ||  ||  ||  || | | ||  | |   | |||  |    || || ||    || ||| | || ||  ||
CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgta--tgatttgttttccttgatattgtgttacatttcccattaactggcatgctacagaccctgataagcttcattttag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G178102_T01 (Zea mays), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtac-ttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggt-aacatctttacag
||||||||||||||  |||||||| | |||||||| | |||||| || || |||||||||||||| || ||||| ||||| || || ||||| ||||||  |||       ||| | || |  | |  |   || |  |    | ||| |   || |  | |   ||  |  ||
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGgtatgttgattcttattggtcttgcattttcttttagcttctgca--gctgtgagacatctaattagtttccatttag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 4
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtac-ttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag
||||||||||||||  |||||||| | |||||||| | |||||| || || |||||||||||||| || ||||| ||||| || || ||||| |||||    ||      |||| | || || | || |  | | |  |     |||  |    |    |||  ||  |  ||
CCTGGTCCGGATTCCGTTGGAATCATCGCTGTTTCGCACAACTGCAGCGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTCGAGCCCACAAAGgtttgctgattcttcttggtcttgctgtttttttat-cttctgcagctgtgcgacaccta-attaatttccatttag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtactt----------gtcctgacttgtttttactctattgtactgcg---ttagttt--tggtgtaaagtatgtggtaacatctttacag
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| ||||| ||||||  |           |  |   || |||  ||| |  |  ||   |    | ||||  ||  ||   || ||| |       ||| |||
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTAGAGCCCACTAAGgtatgttgctggctccatgttcctttatttccactttgataaacaatgaaactggtttcatgaagttgtgtttgttgctgttgtttttcag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtt-------------tttactctattgtactgcg----ttagttttggtgta--aagtatgtggtaacatctttacag
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| || || ||||| |||||| ||  |   |    ||             ||| || |  || ||   |     | | |||  || |  ||     |   || ||| |  |||
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTTGAGCCCACAAAGgtatttaactgtaaccattcattgcagaattattttctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaa-atcatctcag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtact-tgtcctgactt-gtttttactctattgtactgcg----ttagttttggtgtaa-agtatgtggtaacatctttacag
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||| ||||| |||||| | ||   | |    | || | |  |  || ||   |     | |||||  || |  | |   |    ||||| |  |||
CCTGGTCCGGATTCTATTGGAATTGTTGCTGTTTCCCGCAACTGTAGTGGCGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGgtattatgctgtaatgaagcttattcattgctgaacaatgaaaccttgttttattgaactaattgctttccacatcatctcag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag-----------------------------
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||| || || ||||| ||||||  |     |     ||||   | | ||  ||   |||       |   || || | |  |    |||    ||                             
CCTGGTCCGGATTCCATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGCGTGGCAGCACGAGCCTGCGGCCTTGTGAGCCTGGAGCCCACTAAGgtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtttttactctattgtactgcgtta-gttttggtgtaaagtatgtggtaacatctttacag---------
|||||||||||||||||||| ||||| |||||||| |||||||| |||||  |||||||||| |||||||||||||||||| ||||||||| ||||||| | ||  |  ||| || ||    | ||||  ||    | |      |   | | | |   |   | ||| | |          
CCTGGTCCGGATTCTATTGGTATCGTAGCTGTTTCACGCAACTGCAGTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGTTTAGAACCCATGAAGgtaatggtgttttctttttattttaatcttgtgttgtaagaagcggaaattctacgaaggcaatctaaacttcaaatactgtgtag

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTCGTGAGTCTAGAACCCACGAAGgtacttgtcctgacttgtt-tttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacag------
|||||||||||||||||||| || || ||| |||| |||||||| || ||  | |||||||| ||||| |||||||||||| ||||||||| |||||||        || |||||   | ||   ||||  |   | |   || |  ||   || ||  | |  |    |||       
CCTGGTCCGGATTCTATTGGCATAGTCGCTATTTCGCGCAACTGCAGCGGAATTGCAGCACGTGCCTGCGGCCTCGTGAGTTTAGAACCCATGAAGgtaaagagtgcgatttgttacgttctggcttgtgtt-tataatcattagcttacgcta-gtcttgatttgaaaacaaatatag