Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGACATAATCATCAAATATGCTGATCGTCACAATCTTCTTCGCCCTGAAACTGTTGAATCTTTATTTGTCCTTTATCGTATAACAGAAAACCCAAAgtatgtttttaaggttttgcaggcattacattgttttcttatacaatcttcattgtccatattatacatagtttttctgcatttttttgtacttctttagttctatgatcaactattgtctatttgtgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g03280.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAATGACATAATCATCAAATATGCTGATCGTCACAATCTTCTTCGCCCTGAAACTGTTGAATCTTTATTTGTCCTTTATCGTATAACAGAAAACCCAAAgtatgtttttaaggttttgcaggcattacattgttttcttatacaa-tcttcattgtccatattatacatagtttttctgcatttttttgtacttctttagttctatgatcaactattgtctatttgtgcag
  |||||||||||||| ||    |||||||| || ||||| || ||||||||||||||||||||  | |||||||| |||||||| ||| || |  |||||||||     ||   | | ||  |  |   |   |  || ||  || |  |    | | ||  ||  | ||    |    ||||| |    | | |                                    
CAAATGACATAATCATTAAGCCCGCTGATCGACATAATCTACTGCGCCCTGAAACTGTTGAATCACTCTTTGTCCTCTATCGTATCACAAAAGATACAAAgtatg-----aaaactattcatccgattt-tccctcactaatctaagttcttggggactattctactcttaaagctaacacatttctaaa-attgcag----------------------------------