1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTGTGATGGGAATGATAGCCATGGTGAGGATTATGAGCCTGGTAATGATCATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCCgtaatccctctcaaacttttggcattcaatttactttttcgttttttctttggttgatttttgtgacattttcttgttggtaaattgattccag
species | Vitis vinifera |
transcript | Vv10s0003g03120.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCC GGATATGAAAGCAGAATCGTGGGTGGGGCCAGATGGGAAGTTGTACCATAGEST: gi|30297878|gb|CB974672.1|CB974672
genomic: CATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCCgtaatccctc ... ttgattccagGGATATGAAAGCAGAATCGTGGGTGGGGCCAGATGGGAAGTTGTACCATAG
EST: CATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCC GGATATGAAAGCAGAATCGTGGGTGGGGCCAGATGGGAAGTTGTACCATAG
genomic: CATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCCgtaatccctc ... ttgattccagGGATATGAAAGCAGAATCGTGGGTGGGGCCAGATGGGAAGTTGTACCATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGATGGGAATGATAGCCATGGTGAGGATTATGAGCCTGGTAATGATCATCATCATGAGAGCAGCGATGACCATAAGCACCACCACCATGGCCATCCgtaatccctctcaaacttttggcattcaatttactttttcgttttttctttggttgatttttgtgacattttcttgttggtaaattgattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG