Sequence
atgc intronic sequence ATGC exonic sequenceCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatttgagcattacaaaatgacagaaatttgtaggttctgcttgttgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 5
CCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatt-tgagcattac-aaaatgacagaaatttgtaggttctgcttgt-tgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcag
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CCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccattagctctattaagacagtagaaatttg---atttttcttatgcaataatccatgcttatctatcactgagaaatg--gatgtgttaacgttgact-------------------------------------------------------------------------------------------
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G12480.1 (Glycine max), 5'ss of exon 5
CCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatt-tgagcattac-aaaatgacagaaatttgtaggttctgct-tgttgatgaaatataattggcaaatcataaaaaa---tattaat-ctaatatccttcaatttgttgtgcttcattattttc-ttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcag
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CCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGTCCTAAGGAAGGAGACACTCCAGACAGATCAAAATACAGCCAAgtatgtccattagctttattaagacagcagaaatttgatttttcttctgcagtaatccatgcttatctatcactgagaaatgggtgtgttaatgttgacttatatcaacctgttgtg-taaattgttttagctacatgattctttgctgaagacttcatatttat-ttttctctaacagaatgaaattatttatggtgtag
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G18810.1 (Arabidopsis thaliana), 5'ss of exon 5
CCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatttgagcattacaaaatgacagaaatttgtaggttctgcttgttgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcag
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TCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTCTGTTATTGTTGGTCCAAAGGAAGGAGATACACCTGAGAGACAAAAATATAATCAGgtcgg---tgaatttttctgaatggaatttcttaaaagctttgaactttagattctagct--ttgagaaatgactctgtttggatattggttataatgcag--------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584507|gb|CB007202.1|CB007202EST: TTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAG GGAATCAAGTTCTTTGAACCGGAG
genomic: TTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatttg ... caatgtgcagGGAATCAAGTTCTTTGAACCGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatttgagcattacaaaatgacagaaatttgtaggttctgcttgttgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG