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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCTTAGTAGAAACAAGTTGTCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAGGTCTTTCATTCTTgtaggtctcccacacacagaaactgtcttttctatctttatataatgcaaaatggtgattgattcaatgttacttcaatatttcag

Basic information

species Vitis vinifera
transcript Vv10s0003g01490.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G30050.1 (Glycine max), 5'ss of exon 5
GCGGCTTAGTAGAAACAAGTTGTCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAGGTCTTTCATTCTTgtaggtctcccacacacagaaactgtcttttctatctttatataa-tgcaaaatggtga-ttgattcaatgttacttcaatatttcag
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GCGGCTCAGCAAAAATAAACTATCTGGACAGATTCCTCAGCTTGTTGCTAATCTCACAGGCCTTTCATTCTTgtatgcactttat-cacagt-----tctattgtatttttgcttaaatccgtaaaagtaaatctcattactgttccatatatgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713153|gb|EE088826.1|EE088826
EST:     TCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAAGTCTTTCATTCTT                         GGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAA
genomic: TCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAGGTCTTTCATTCTTgtaggtctcc ... aatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAA