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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAATCTCAAGAATGTGAGGGAGCTGATTTACAAGAAGGGTTTTGCAAAGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagatattttgctgaattctttgaccttgttgggcggggttcttgagtcctcagctttattctttcttgtttggcag

Basic information

species Vitis vinifera
transcript Vv09s0070g00130.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110424125|gb|EC990481.1|EC990481
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110707697|gb|EE084394.1|EE084394
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110729308|gb|EE105444.1|EE105444
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|71882306|gb|DT031361.1|DT031361
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110723130|gb|EE100088.1|EE100088
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|32245909|gb|CD711728.1|CD711728
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110702626|gb|EE078762.1|EE078762
EST:     AGATAGAAAGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|30134184|gb|CB919522.1|CB919522
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCAT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCAT
EST: gi|46910138|gb|CN545513.1|CN545513
EST:     AGATAGAAGGGCAGAAAGTTCCTTTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110370345|gb|EC929459.1|EC929459
EST:     GTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: GTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|71883321|gb|DT032376.1|DT032376
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
EST: gi|110731600|gb|EE106153.1|EE106153
EST:     AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAG                         GCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT
genomic: AGATAGAAGGGCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGgtatgagata ... tgtttggcagGCGCTGGGGAAGCATGGCATTATGTGCATAGAAGATATTGTACACGAAATT