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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag

Basic information

species Vitis vinifera
transcript Vv09s0054g00890.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 5
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgta--tcattatagtcatttggaggtga---tttgaaaaaactattattttgatttgagactcttcatactctgat-taaaccagtttcatctcttggtggtag
|| ||||| |  | |||||| ||||| |||||||| |||||||| || |||||||| ||||||||||||    | ||| | ||  ||||  ||||| |||||||   |     | ||  |||     |      || ||| |   ||||  |    | ||  |||    ||     |     ||||| |  | | |   | | |||  |  |  | ||
ACTATTGCTATTAAATCTGGAGATGTGTACATTCCGCGTGGTGTCTCAGTTCCTGCCCTTGACAAAGATGCTTTGTGGCATTTTAAGCCAGAAAAACTAGgtaaagtattttgtatacttcaggggggaggggggggggttaccttttgttatcctttttcatttagcatgcagtgcaaggcactctaaaatcatctcctattatcattatgctgcag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactc---ttcatactctgat-taaaccagtttcatctcttggtggtag--------
   || || |  |  || || ||||| || |||||||||||||| || |||||||| |||||||||||| || | |||||||| ||||| |  ||  |||||| |  |   ||  ||  |      |  ||  ||  || |||   |   || || || | || |   | |    ||   ||| ||||   | | |  |   | |  | ||| ||         
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgt-gacttaacatagtacctccattgtt--gaaatggttttgcatg-ctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G421857_T04 (Zea mays), 5'ss of exon 6
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactc---ttcatactctgat-taaaccagtttcatctcttggtggtag--------
||||| || |  |  || || ||||| || |||||||||||||| || |||||||| |||||||||||| || | |||||||| ||||| |  ||  |||||| |  |   ||  ||  |      |  ||  ||  || |||   |   || || || | || |   | |    ||   ||| ||||   | | |  |   | |  | ||| ||         
ACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagt-gacttaacatagtacctccattgtt--gaaatggttttgcatg-ctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 5
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag
   ||||| |  |  || || ||||| || |||||||||||||| || |||||||| ||||||||||||  | | |||||||| ||||| || ||| |||||| |  |   ||||||  |  | | |  |    | | |  ||| | |  || || || | || |   | |  |     | |||||   |  |||  || ||  |       
---ATTGCCATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGCATTATGGGAATTTCAGCCAAAGAAACTAGGTAgt-gacttaatgtagtaccaca-ttgtccaaatg-gtcttgcata--ctgtttttgttatctctaagttgta----tgtgattt--cttgttatatttccag-------

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 2
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag
|||||||| |  |  || || ||||| || |||||||||||||| || |||||||| ||||||||||||  | | |||||||| ||||| || ||| |||||| |  |   ||||||  |  | | |  |    | | |  ||| | |  || || || | || |   | |  |     | |||||   |  |||  || ||  |       
ACCATTGCCATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGCATTATGGGAATTTCAGCCAAAGAAACTAGgtagt-gacttaatgtagtaccaca-ttgtccaaatg-gtcttgcata--ctgtttttgttatctctaagttgta----tgtgattt--cttgttatatttccag-------

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 5
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatt-tggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag
|| ||||| |||| ||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||| |||||||| || ||||| ||| | ||||  || | |||| |||  || |  | | | |  | ||  | |  | |||  |||| | | |  ||   |  ||  |  ||||||  |  |  |   ||   ||||||  ||
ACTATTGCTAAAAGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgta-ccagacaaat-tatttttctttttactgttaaagttctatatagaaa--attagtattacgtggaccatttttt--tctgat--attctatgatattcattggtgacag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 5
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag
|| ||||| |||  ||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||| |||||||| || ||||| ||| | ||||    |  || | | |   | |   |  ||  || |   || | ||||  | ||||  |      |||  ||  |   |||||  |     | | ||    |||||  ||
ACTATTGCTAAACGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagacaaattatttttctttttactgttaaagttttatttagaaaataagtattacgt----ggaccattttt--cctgatata-----tgtgattcactggtgacag

upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 5'ss of exon 6
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactcttcatactctgattaaaccagtttcatctcttggtggtag
|| ||||||| |||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||||   || ||||| |||||||| || ||||| ||||||        ||  | | |  |      ||       | |    ||    | |||| | ||| |   |||| ||  ||  ||| ||   ||||  | |   |       
ACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGgtaat-------gtggtttactccatatgcctg-------tctatggaagtgttcatttggttttaa---tcttgatggtc-aattgaattcgttttgtttgcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718002|gb|FC067562.1|FC067562
EST:     TCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAG                         GTGAGGGTGATCTTC
genomic: TCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaag ... ttggtggtagGTGAGGGTGATCTTC