Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatag

Basic information

species Vitis vinifera
transcript Vv09s0054g00010.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgct-tttgtgatgatag
||| |||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||| ||||   |  | ||  |||||    |  | ||  ||||||    | ||   || ||||   || |         | ||| |    |      || |   | || | |||||        
CCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgttt----gccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcag---

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTT---GACCGACAACTCCATTGTGGAA-CAGgttt--ttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatag--------
||| ||  ||||||||||  | |||||||| ||||||||||| || |||||| | ||||||||||| | | |  |   || | ||||   ||||| |||   | ||||  |  |||     |  ||  || || | |||  || |||    |||| |||   ||  ||    || | | || || |          
CCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAGGAGgtatgtttgctcttgtaggctttcattgtg-ttgtatatatgccatttacagcta-atcaaattcttatttggcctat-tgttggtcaaccattag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgttttta----tgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgt-tgctaacctgc-ttttgtgatgatag-----
||| || |||||||||||  | || ||||| ||||||||||| ||||||||| ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||    ||  | |||  |||| | |  | | |    | || | |   | |  ||   || | | || |   || || || |       
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatctggttcctgtgttc-tgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgttttta--tgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatag----------------------
||| || ||||| |||||  | || ||||| ||||||||||| ||||||||  ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||    |    |||||  |  | || || ||  |   |||||  ||| | ||  |  |   |   ||   |||||||                        
CCCAAACTTGAACAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactgtacatctggttcctgtgttc---tgttta-tatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcg-----attgtttgctatatcttgttgctaacctgcttttgtgatgatag-------------
||| ||||||||||||||  |||||||||| ||||||||||| ||||||||  | ||||||||||||| ||| ||||| |||||||| ||| | ||||||||   | ||    ||| |    | ||  ||| | | |      |||| ||| | | |  | || || |  |  |||       |||              
CCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg---tctattctgtagtcctctgtaaacacttccattgcttgtt-tgttctattacttagtttttttccctgacataacattcaatgccag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagc--gattgtttgctatatcttgttgctaacctgcttttgtgatgatag-------------
||| ||||||||||||||   ||||||||| ||||||||||| ||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   | | |  |  |  | ||  |  | |   |||| ||| | | |  | || || |  |  ||   |||  |||              
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtt-tgttctattactcagttttttcgctgac-ataacattcaatgccag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcga--ttgtttgctatatcttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||   || | | |  |  |  || ||  |     ||  |  ||  ||| ||   | | || || |||||   |||      
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt---gttaatttacaattctgtattacaaatttgaattaattcactacat---gcttctgacttgcttggatgacag---

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| ||  |    ||     ||||  ||    ||      |  || |||| ||   | | || || |||||   |||      
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacat---gcttcttacttgcttggatgacag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719010|gb|FC067630.1|FC067630
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|33408299|gb|CF213926.1|CF213926
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|351030969|gb|FQ439005.1|FQ439005
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110427908|gb|EC994363.1|EC994363
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110362548|gb|EC926091.1|EC926091
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|77588453|gb|DV223438.1|DV223438
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110686521|gb|EE064257.1|EE064257
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71870639|gb|DT019694.1|DT019694
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|33408211|gb|CF213838.1|CF213838
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873389|gb|DT022444.1|DT022444
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|34362333|gb|CF403918.1|CF403918
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110362206|gb|EC925723.1|EC925723
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110360464|gb|EC923584.1|EC923584
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161716946|gb|FC068826.1|FC068826
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110364696|gb|EC928138.1|EC928138
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873570|gb|DT022625.1|DT022625
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161719477|gb|FC067687.1|FC067687
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873637|gb|DT022692.1|DT022692
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110387232|gb|EC951884.1|EC951884
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161714799|gb|FC063247.1|FC063247
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110365131|gb|EC928904.1|EC928904
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC