Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtag

Basic information

species Vitis vinifera
transcript Vv09s0018g01920.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgag-ttcctaaaactgacctaatattcacttgctaaatcatgtgtag---------
||| || ||||||||  |  | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |  || ||||       || || |  |||     |||||   | ||| || ||   |        | |  ||  ||| ||| ||                
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtat--gatattggaatttgtttat-tatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc

upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgttt----ttgaaattgatccccattgatctgcatc-tgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtag----------------------------------------------------------------------------------
||| || |||||||| ||  | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |    ||| ||||  |      |    | |||  |  ||| ||  | | |  | |    |||||   ||| |  ||  ||| |||  | | | ||                                                                                  
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataa-acccatatgccaaaata-gagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag

upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtag---------
| | || || ||||| ||  |||||||||||| |||||| |||||||||||||| ||||||||||| ||  | ||||| || |||||||| || |  ||||||| | | | | || |    |  |||| || ||   | | |    ||||   |  ||| ||   |     |   ||   |||  |  || |          
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgt-acactcattcttgct--tctgtatatg---tatattcagcgagcatc-gaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700119|gb|EE077795.1|EE077795
EST:     ATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAG                         TTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTAC
genomic: ATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaa ... tcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTAC