Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaattttctgaatttgtggtccag

Basic information

species Vitis vinifera
transcript Vv09s0018g01780.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 5
TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgaca-tgccccttgatagagatctcttgtaagatttgctctcttttta-agtttcttaaatt-ttctgaatttgtggtccag
|||| | || |||||||| || ||||| |||||| | |||||||| |||||||| ||| |||| |||||| |||||||||||||||||| | | |  |           ||    || | | |   ||| ||    ||| |  | | |  ||||    | |     ||||  |||| || ||   |||| |||||  ||
TGATTCCGGAAGAAAAGTGGAAGATCCAGAGTTGTTAGAGGCAATCCGTTTGACAATTTTAAATAATATGATTCAGTATCACCCGgtatgcttctcaa-----------ctctaattaatactattcctggagcatgatttggtttgaactttgaaagcatcaaggagttaattaatttgtttcaaattggtggtgaag

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 5
TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaatt-ttctgaatttgtggtccag
|||| |||| |||||||| || ||||| |||||| | |||||||| |||||||| ||  | || |||||| |||||||||||||||||| | | |  |    | |  | ||   |||| | |  |  ||| |         ||| |||  |             ||||  |||| || ||   |||| |||||  ||
TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTTGACAATATTGAATAATATGATTCAGTATCACCCGgtatgcttctcaac---tctaatactattcttgtcttatc--ttggt---------ttgaaagcatcagg--------gagttaattaatttgtttcaaattggtggtgaag

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G02580.1 (Glycine max), 5'ss of exon 5
TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaattttctgaatttg-tggtccag
||||||||| |||||||| || || || |||||| | |||||||||||||| || |||||||| ||| |  ||||||| |||||||||  | |    || |||    ||  | ||| ||| |     | | |||| | |      |      | ||||      || |  ||| |||||   || | | ||||| ||
TGATACTGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTAACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac-caactatcctctttctcgctggaccttaatttggttagaaacca-----agaggcagttctc------agctaattagatttttcaaactgggtggtcaag

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 5
TGATACTGGTAGAAAAGTTGAGGATCCTGAGTTGCTTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattcctttgtaaatatttgtttcttggcttgacatgccccttgatagagatctcttgtaagatttgctctctttttaagtttcttaaattttctgaatttgtggtccag
|||||| || |||||||| || || || |||||| | ||||||||||||||||| |||||||| ||| |  ||||||| |||||||||  | |    || |||    || ||  || ||   ||  ||| ||   |     ||  |||    |      || | || |  ||  | |||   || | |||||||||
TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCGgtaagcttac-caactatcctctttttcactgga---gctgcttaatttgg-----ttagaagccaagagacaattgtcagctaatttgagttttcaaactggtggtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29784297|gb|CB344831.2|CB344831
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACATCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|349823556|gb|FQ414966.1|FQ414966
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|32271352|gb|CD720511.1|CD720511
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110375956|gb|EC940987.1|EC940987
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110386695|gb|EC951311.1|EC951311
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110411796|gb|EC977519.1|EC977519
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|111125066|gb|EE253677.1|EE253677
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACACCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|351024111|gb|FQ423534.1|FQ423534
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|34542620|gb|CF510852.1|CF510852
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|349823504|gb|FQ414914.1|FQ414914
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110372559|gb|EC936737.1|EC936737
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|32248427|gb|CD714246.1|CD714246
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110387079|gb|EC951719.1|EC951719
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|351015119|gb|FQ444408.1|FQ444408
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|351022170|gb|FQ438755.1|FQ438755
EST:     TGAGGGCA-TTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAAGAAGCCTT
genomic: TGAGG-CAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGA-GTAGCCTT
EST: gi|110390868|gb|EC955807.1|EC955807
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGC
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGC
EST: gi|29784413|gb|CB345109.2|CB345109
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|32268834|gb|CD717993.1|CD717993
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110385943|gb|EC950505.1|EC950505
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110413183|gb|EC978960.1|EC978960
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|29784391|gb|CB345050.2|CB345050
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTA-GACCACC
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACG-CCACC
EST: gi|32269676|gb|CD718835.1|CD718835
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110372429|gb|EC936593.1|EC936593
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|110383897|gb|EC948302.1|EC948302
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
EST: gi|29785638|gb|CB342854.2|CB342854
EST:     TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGAATCACCCG                         GAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA
genomic: TTGAGGCAATTCGTTTGACGATTATAAACAATATGCTTCAGTATCACCCGgtattccttt ... tgtggtccagGAATCAAGCGAGCAGTTAGCTATGGGAGTAGCCTTTGGAATTACGCCACCA