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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATTGGAAACATGCAGgtagtttcaaaaacttcaaccatgcatattgatttgagtttagggtctgagtgggccttttaaggttaattttggttttggtaaattctggtatgcatcctgtgaaatgggttgccttgcaactgaaacag

Basic information

species Vitis vinifera
transcript Vv09s0018g00410.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G23460.1 (Glycine max), 5'ss of exon 5
GGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATTGGAAACATGCAGgtagtttcaaaaacttcaaccat-gcatattgat---ttgagtttagggtctgagtg--ggccttttaa--ggttaattt--tggttttggta-----aattctggtatgcatcctgtgaaatgggttgccttgcaactgaaacag
||| || | ||||||||| ||  ||  |||||| |||||||| |||  | |||||||| |||||||||||||| | || || |||||||||||||||||||||     ||||| |  ||     | |||   ||    |   |||      ||| |   |   | || |    ||||| |  |   |||   |     | |  |        | ||   |  || |||  | |||||||| |  ||
GGGACTTCTAACCAGTACCTACCCTAAAGAGGTCTTGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGgtaaacaaaaaaaataaaattgcagtataggtatcttctatctttcaatgatgattattgatgtcttgattaattaatatgatacatttaagaaccagagtcattaccatagttctaatagttgtgttatcgtgcaactgga-tag

upper sequence: Vv09s0018g00410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G02560.1 (Glycine max), 5'ss of exon 5
GGGGCTACAAACCAGTACTTATGCTGGAGAGGTTTTGTTTTCAATAACACTAGCTATTTTGGGGCTTATCCTTATGGCACTACTGATTGGAAACATGCAGgtagtttcaaaaacttcaaccatgcatattgatttgagtttagggtctgagtgggccttttaaggttaattt--tggttttgg----taaattctggtatgcatcctgtgaaatgggttgccttgcaactgaaacag
|||||| | ||||||||| ||  ||||||||||| ||||||| ||   | |||||||| |||| ||||||||| | || || |||||||||||||||||||||     ||||  ||  |  ||   |||| || |     |   |  |    | | |||      ||||| |  |  ||||       || |           | ||      || |||  | || ||||| | |||
GGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATTGTAATAGCTATTATGGGACTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGgtaaaca-aaaagtttgtagtataggtatttatctttcaatgatgattattggtgtcttgattaattaatataatacttttaagagtcaagtcactaccattgttctaatctttgtgttatcgtggaactgga-cag