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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcattacctatatgtttagaaataaatgaacccgaaccatcttcaaagaaaatgtaatttcttttggtgatatgtgtgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02210.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g19930.1 (Oryza sativa), 5'ss of exon 5
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgta------------agatcattacctatat--gtttagaaataaatgaacccgaacc----atcttcaaagaaaatgtaatttcttttggtgatatgtgtgcag
|    || ||||| ||     |  |||| ||| | ||||| ||||| |||      |||||||| || || |||||||| || ||||||||||||||||||||            | |  |||| ||   |  || |  |  |||    |  | |||     |   | |||||  |  |   |||  |   |  |   |   |||
ACCGTGTGCTTGGAGTTTCAGGCGTCCGTGTAGTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGgtacataaacacagtaaaaaattaacttctttagtctttacctaatgatattctaactttaaactcttaaagactaaattgcttccctca-tatttcatactcag

upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g31030.1 (Oryza sativa), 5'ss of exon 5
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatca----ttacctatatgtttagaaataaatgaacccgaaccatcttcaaagaaaatgtaatttcttttggtgatatgtgtgcag-------
|    ||  |||||||     | || || || || ||||| || || ||      ||||||||| || || || ||||| || |||||||||||||||||||||   ||      | |||||    |     | |||  ||   |   |  ||||| |    ||   |||||||||      ||| |           
ACCGTGTGATTGGTGTCTCAGGCCTTCGTGTGATCGATGGGTCGACCTTATTTAGGTCACCAGGAACCAACCCGCAAGCCACAGTCATGATGATGGGCAGgtaaaggcaaaaacaaactatagtactctcctttaatctacaaaattaaatttcaagggt--tgatctttcttttgtcatattgtctttcatggtcag

upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G02790.1 (Glycine max), 5'ss of exon 5
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcat-taccta-tatgtttagaaataaatgaacccgaaccatcttcaaagaaaatgtaatttcttttggtgatatgtgtgcag-----------
||||||||||||||||  | || ||||| ||  ||||||| ||||| |||   ||||||||||| || || |||||||| ||||| ||||||||||||||||| |  ||| ||   |  ||       | ||||       | |  | |||       ||  || | | | | |  | || |    ||            
ATAAGGTTCTTGGTGTTGATAGACTCCGTGTGGTTGATGGCTCAACATTTTCTGAGTCACCAGGAACCAACCCTCAAGCTACTGTGATGATGATGGGCAGgtatgtacatatatagaacataacactgagtaaacatctttggattaactttgttaccaacttactatatatagaagttagggcgccaaattactaataa

upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G01220.1 (Glycine max), 5'ss of exon 7
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcatt---acctatatgtttag-aaataaatga--acccgaaccatcttcaaagaaaatgtaatttcttttggtg-atatgtgtgcag------------------------
| ||||||||||||||  |||| ||||| ||  | ||||| ||||| |||   || ||||| || || ||||||||||| ||||||||||||||||||||||| |  |  |   | |   |   | || ||| |||||    | | ||   |  |   | ||  | | ||  |    | || || ||  ||                           
ACAAGGTTCTTGGTGTTGACAGACTCCGCGTGGTAGATGGCTCAACATTTGATGAATCACCTGGAACAAATCCTCAAGCAACTGTCATGATGATGGGCAGgtatgtactctgggatcatgaaactgagcaaacaaatgtttgcacaaaatttgatttcaaaagttatgataccaacagctggatttgcatgtcaataatctatttatgtttgtgacag

upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcattacctatatgtttag-aaataaatgaacccgaacca--tcttcaaagaaaatgtaatttcttttgg-tgatatgtgtgcag---------
||||||||||||||||  | || || || ||  ||||||| ||||| |||   ||||| ||||| || || |||||||| ||||| ||||||||||||||||| |  |||     | ||    |   | ||||       | |     | ||       | | | ||| |       || ||  | ||            
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaacactgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt

upper sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G72970.2 (Arabidopsis thaliana), 5'ss of exon 6
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaag-----atcattacctatatgtttagaaataaatgaacccgaaccatcttcaaagaaaatgtaatttcttttggtgatatgtgtgcag
  || |||||||||||  |||||||| |||| ||||||||||||||||||   ||||| ||||| || || || ||||| ||| | ||||||||||| ||||||      ||||||||| | ||  |  ||| |  | |    |     |  |||||   | |   |     |||  || | || | |||||
GCAAAGTTCTTGGTGTCGACAGGCTCAGAGTTATTGATGGTTCAACGTTTGACGAGTCTCCAGGAACCAACCCGCAAGCTACTATGATGATGATGGGAAGgtaaatcaaaatcattaccaacataat--gaattggaggttttctttttag-ttcaatatataaacagaggattt--gtca-atctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821154|gb|FQ408741.1|FQ408741
EST:     AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAG                         GTACATGGGATTGAAGA
genomic: AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcat ... atgtgtgcagGTACATGGGATTGAAGA
EST: gi|349809313|gb|FQ401081.1|FQ401081
EST:     AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAG                         GTACATGGGATTGAAG
genomic: AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcat ... atgtgtgcagGTACATGGGATTGAAG
EST: gi|352789740|gb|FQ478555.1|FQ478555
EST:     AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAG                         GTACATGGGATTTGA-GATTTTACGAGAGAGATTAGGA
genomic: AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcat ... atgtgtgcagGTACATGGGATT-GAAGATTTTACGAGAGAGATTAGGA
EST: gi|349826672|gb|FQ418763.1|FQ418763
EST:     AGGGAGTCACCAGGCACTAATCCTCANGCGACTGTCATGATGATGGGCAG                         GTACATGGGATTGAAGATTT
genomic: AGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcat ... atgtgtgcagGTACATGGGATTGAAGATTT