Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTTTATCAATAACCACTTGAGCTTCAAGGTCATGTATCATAAGGATCCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaacttatctttttcttgcaatttttatcagttctgcatttctcatatgctgcaagctgtgattgacatgtgttgactataggcctcttttggt...

Basic information

species Vitis vinifera
transcript Vv09s0002g02140.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G20640.1 (Glycine max), 5'ss of exon 5
AGTATTTTATCAATAACCACTTGAGCTTCAAGGTCATGTATCATAAGGATCCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaacttatctttttcttgcaatttttatcagttctgcatttc--tcatatgctg-caagctgtgattgacatgtgttgactataggcctcttttggt
|||||||||| |||||||||||||| ||||  ||||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||| || ||||||||||  |||    |         |  |  | |   | |    ||  || |  || |||| || |      || |||   ||| |  | | ||    | | |    
AGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttctcttctccaccatctctctctcctttaagggtgtgttgcattcttatgttggcgtaacatggttgg-gtgtttatattttaatattttatat--

upper sequence: Vv09s0002g02140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G01240.1 (Glycine max), 5'ss of exon 5
AGTATTTTATCAATAACCACTTGAGCTTCAAGGTCATGTATCATAAGGATCCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaacttatctttttcttgcaatttttatcagttctgcatttc--tcatatgctg-caagctgtgattgacatgtgttgactataggcctcttttggt
| |||||||| |||||||||||||| ||||  ||||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||| || ||||||||||  |||   ||         |  |  | |   | |    ||   | |  || |||| || ||     || ||||  |  ||||  | |     | ||     
AATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttcttttctcccccatctctctctccgttaagggtgtgctgcattcttatgttggcataacatggttgaacttggttgggtttttatattttaa---

upper sequence: Vv09s0002g02140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G13772.1 (Arabidopsis thaliana), 5'ss of exon 5
AGTATTTTATCAATAACCACTTGAGCTTCAAGGTCATGTATCATAAGGATCCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaacttatctttttcttgcaatttttatcagttctgcatttctcatatgctgcaagctgtgattgacatgtgttgactataggcctcttttggt
| || |||||  |||| ||||||||||||   |||||||| || |  || |  ||| |||||||||||||||||||||| ||||||||||| || |||||||     |  ||| ||  |    | | |||| |  |||     | || ||  ||  |  |||||   |      | | ||    ||||            
AATACTTTATACATAATCACTTGAGCTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTTGAGGTTACGCCTAACAGgt-----aggttacctact----ggatttttgaggagt-----acttgtctaattgtataagctaacaggtctttatctttttgatag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705906|gb|FC054812.1|FC054812
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTTCTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|110691298|gb|EE069240.1|EE069240
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTTCTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|110719001|gb|EE096474.1|EE096474
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTTCTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|351033128|gb|FQ446481.1|FQ446481
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|351030399|gb|FQ432337.1|FQ432337
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCNAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|349833072|gb|FQ416450.1|FQ416450
EST:     CCTGAGACTGATTCTGCTCAAATTGTTGGGTTTGAGGTTACTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|34546863|gb|CF515095.1|CF515095
EST:     CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTTCTCCAAACAG                         TATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC
EST: gi|161713929|gb|FC062883.1|FC062883
EST:     CCTGAGACTGATTCTGCTCGA-TTGTTGGGTTTGAGGTTTCTCCAA-CAG                         TATTAATCATGAG-ACAAGGAGTGG-ATGAGAA-AACCCTC-GTTGGCA-C
genomic: CCTGAGACTGATTCTGCTCGAATTGTTGGGTTTGAGGTTACTCCAAACAGgttctgtaac ... ttgcaaacagTATTAATCATGAGTACAAGGAGTGGGATGAGAAGAACCCTCAGTTGGCAAC