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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTgtaagatatgtttgggtactcagaaaatgtttcaagttccaatccgatattttaatagtatgaggaaccactcacataaaactccatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g01370.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g07940.1 (Oryza sativa), 5'ss of exon 5
GTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTgtaagatatgtttgggta-ctcagaaaatgtttcaagttccaatccgatatttta-atagtatgaggaaccactcacataaaactccatcag---------
|||| ||||| ||||| || || || || |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || ||||| ||   |||| || | ||    ||        ||||  |     |||  | | | |   |  ||    ||   ||     |  |  |         
GTGGCTATGACAAGGAGGAGAAGGCTGCAAGGGCTTATGATTTGGCAGCACTCAAGTACTGGGGTCCAACAACTCACATAAATTTTCCAgtaag-tacagttggataacacatcgcattcactccattcctcttttcaattcaagacaatggaaataaaggatccagtaggggccggttcgtttcgttcc

upper sequence: Vv09s0002g01370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G04260.1 (Glycine max), 5'ss of exon 5
GTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTgtaagatatgtttgggtactcagaaaatgtttc--------aagttccaatccgatattttaatagtatga-ggaaccactcacataaaactccatcag----
|||| ||||||||||||||||||||||| | ||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |   ||  |  |||   | ||| ||          ||  ||  | |  |  | ||| |  |   |  | |  | | | ||| ||       |     
GTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCAATCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggt---ttctgaaacttgtacaattttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtaataattaaatagaaacaagggaattga

upper sequence: Vv09s0002g01370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G00950.1 (Glycine max), 5'ss of exon 6
GTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTgtaagatatgtttgggtactcagaaaatgtttc------aagttccaatccgatattttaatagtatga-ggaaccactcacataaaactccatcag---
|||| ||||||||||||||||||||||| | |||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |  |         | |   |  | |      ||  ||  | |  |  | ||| |  |   |  | |  | | | ||| ||     | |    
GTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggttttctgaaacttgtacagttttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtagtattaaaatagaaacaattgaattg