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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAGCTAAATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgattatatatttatttttttccctttttccatggtaataattgtttcactattgtgtcatgttgcaattatccccaatgcaaatattcaaattaagcacaaaaacctttcaacttaccccttatattgacag

Basic information

species Vitis vinifera
transcript Vv09s0002g00390.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375926|gb|EC940956.1|EC940956
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCGCGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349817979|gb|FQ407968.1|FQ407968
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCATAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351044484|gb|FQ443015.1|FQ443015
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349807839|gb|FQ402230.1|FQ402230
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349817476|gb|FQ407266.1|FQ407266
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351012185|gb|FQ426907.1|FQ426907
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349814725|gb|FQ409948.1|FQ409948
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351024997|gb|FQ433414.1|FQ433414
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349822671|gb|FQ412935.1|FQ412935
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351053555|gb|FQ459302.1|FQ459302
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCGATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351049282|gb|FQ429025.1|FQ429025
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|110406357|gb|EC971927.1|EC971927
EST:     CAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: CAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349821346|gb|FQ404478.1|FQ404478
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351048077|gb|FQ441249.1|FQ441249
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351031133|gb|FQ444960.1|FQ444960
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|351056004|gb|FQ453465.1|FQ453465
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|352790509|gb|FQ478149.1|FQ478149
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|349822083|gb|FQ408412.1|FQ408412
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|161715268|gb|FC068022.1|FC068022
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGATTTGGAGAGATATCTTATAAG                         GCGCGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
EST: gi|110392389|gb|EC957773.1|EC957773
EST:     AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAG                         GCGCGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT
genomic: AATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgat ... atattgacagGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAGCTAAATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGgtatattgattatatatttatttttttccctttttccatggtaataattgtttcactattgtgtcatgttgcaattatccccaatgcaaatattcaaattaagcacaaaaacctttcaacttaccccttatattgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA