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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag

Basic information

species Vitis vinifera
transcript Vv08s0217g00020.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G43390.1 (Glycine max), 5'ss of exon 6
-ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag
  || ||| |  | | |||||| || || ||||| || ||||||||||||||||| |||||||||||| | |||||||| |||||||| || ||||| ||||||  |       | || |||||    ||| || | |  | || |  ||    | |  |        |||||      ||   ||||| 
TGCTTAGTTTGTCTAATCCAGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAggtaggtcaa----ttatattaacatgtatactagtatggtagagcttat---gcatgataaaaagtaaattttcattctc---ttgca-

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 6
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag
 || ||| |  | | ||| || || || ||||| || |||||||||||||||||||||||||||||| | |||||||| |||||||| || || || |||||| ||       | || | |||  |  || || | |  | || |  ||    | |  | |      |||||      ||   ||||||
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaa----ttatatcaacatatttactagtatggtagagcttat---gcatgatataaagtaaattttcattctc---ttgcag

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 6
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag
 || |||||  ||| |||||| || || ||||| ||||||||||||||||||||||||||||||||| | ||||| ||  |||| || || ||||| ||||||||| ||| | |    ||||   |  || |  | | ||  | |    || |   ||||       || |||     ||   ||||||
GCTTAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatt-tggtttta---ttaatatatttactgatatgatgcatctt-cctaatcctttgcttagtaaaattccaatctc---ttgcag

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 6
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag
  | |||||  ||| |||||| || || ||||| ||||||||||||||||||||||||||||||||| | ||||| ||  |||| || || ||||| |||||||| || | | |    ||||   |  ||    | | ||  | |   || ||   ||||       || | |     ||   ||||||
GGTAAGTGTATCCAATCCAGATACAAGGGTTGATGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaat-atagtttta---ttaatatatttaccgatatgatgcatct--tcctatcctttgcttagtaaactaccaatctc---ttgcag

upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S80_199V6.1 (Physcomitrella patens), 5'ss of exon 5
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatatta-ttcttattgaccacatcttactttttgtgctcataatttctgg--aatcaaattgcag---------
 ||||| ||  |||  ||||||||  | || || ||||| ||||||||||| || ||||| || ||| ||||||| || || ||||| |||||||| ||||||||| |        | ||  |    |||| |  |  ||      ||   |||||    |   |   || |  ||    | || | ||  |         
TCTGAGCGTGTCCAACCCAGAGACGCGTGTAGATGATGCTGAGTTTGAGGAAAACGAAGTGTACGCAATAGATATCGTGACCAGCACTGGTGATGGAAAGgtaattttctaaacattcttttcagcgatatcaacttctaccatatacgg-ttactaggagcattttcaactgttgtttgaacagaatgaggttttgcttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22007317|gb|BQ792351.1|BQ792351
EST:     AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAG                         CCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC
genomic: AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgg ... caaattgcagCCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC
EST: gi|46917947|gb|CN547276.1|CN547276
EST:     AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAG                         CCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC
genomic: AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgg ... caaattgcagCCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC
EST: gi|37187910|gb|CF607261.1|CF607261
EST:     AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAG                         CCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC
genomic: AGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgg ... caaattgcagCCAAGGCTACTTGATGAGAAGCAGACAACTATTTACAAAAGAGCAGTCGAC