Sequence
atgc intronic sequence ATGC exonic sequenceGATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 6
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
|||| ||||| || |||||||||||||||||||||||| ||| || || | || ||||| || ||||| |||||||||||||| | ||| | |||||||| || | | | | | | | || | ||||| | | | | || | ||| |||
GATTACTTCTTGTACATGGACACTGGAATTATCAGCGTATTGCATACATGATCCTCTACAATTTTTACCGAAATGCTGTTTTTGTGCTAATGTTGTTCTGgtacacattctaccccctgctcattcttgtatttgtaatt---tcaattgaagctaacaaaaatattactatgtgattttttcag---------------
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G398288_T01 (Zea mays), 5'ss of exon 5
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgta---------tttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
|||| ||||| |||||||| ||||||||||||||||| | | || || | || |||||||||||||| |||||||| || ||| | ||||| |||||||| ||| || | | | || | |||| | || | || | ||||| ||| | || || | ||| || ||| ||
GATTACTTCTTGTGCATGGGCACTGGAATTATCAGCGGATCGCATACATGATCCTGTACAACTTCTACCGGAATGCTGTCTTCGTTCTAATGCTTTTCTGgtacgttcgtcccctatatatacctttatcgttgtttgaacctctggtctttgtagatcccttttttgtgtgtgtacttaa--gcattcaaattttagaatt-------
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G41040.1 (Glycine max), 5'ss of exon 9
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttcc-----gttaacccccagttctctt-aattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||| |||| | | | | || |||| | ||| | | | ||| | | | | || | | | || | ||| |
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTATTTTGgtatgtatggttgtccttggatatcacacgagttactcttgtgtttacatgagttggtctctctttccttatttctttcgttatccctgatctttcagac------
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 5
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtctt-ttatgtatttgatattggctgaatttgaagttttttatgtgaccta---
||| ||||| || ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||| ||||| |||||||||||||||||| ||| | |||| ||| | | | | | | | | ||| |||| | | | || | | || || ||| || | | ||| ||| ||
AATTACTTCTAGTTCATGGACACTGGAATTACCAGCGTGTTGGTTATTTAATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTGgtatgtat-agttttcttttaatactgatggctgact-tccacttgtttgtttgatcaattagtctttcttaactt--ttttaattctgctatctgatctttca
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 8
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| | || |||||| |||| | | | | || ||| | || | || || || | | | | || | || | | |||| | |
AATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGgtatgtatggttgtccttggatatcacataagttactcttgtgtttatataagttggtctctctttccttatttcttttgttatcccctgatgtttcaga
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S38_368V6.1 (Physcomitrella patens), 5'ss of exon 6
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgta--tttatgaattttt--atttttttccgttaaccccca-gtt-ctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta--
|||||| || |||||||| |||||||| ||| ||||| | || || ||||||| |||||||| || ||||||||||||||||| ||||||| |||||||| ||||| || || |||| || || | ||| | || | || | | || | ||| || |||||| | ||| ||
AATTGCTCCTCGTGCATGGTCACTGGAACTATGAGCGTTTGGGCTACATGGTTCTCTACAACTTTTATCGCAATGCTGTTTTTGTAATGATGCTTTTCTGgtaaatttattgcttcttgaatttgcttttatttggttgaatgttgtttttgaatgccaagttcacatccgctatcaact--------agttttccaagtggactttt
upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S39_64V6.1 (Physcomitrella patens), 5'ss of exon 7
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgt--atttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
| || || || |||||||| ||||||||||||||||| | |||||| |||| |||||||| |||||||| ||||| |||||||| ||||||| ||||||| | | || | | || | || | || | || || | || || || || |||| || |||| |
GCTTTCTCCTAGTGCATGGTCACTGGAATTATCAGCGCTTGGGTTATATGGTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTGgttagtcaaggacatctcatcgtaccatcttcatttgcattactggaccccgtagtgagagttattttcatgatctacttttgttcaattgtatgcaagt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688979|gb|EC928082.1|EC928082EST: GTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTG GTATATACTGTCCACAGCTTTTTCAACAACTTCGGCATTAACAGATTTGAG
genomic: GTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatga ... gtatctgtagGTATATACTGTCCACAGCTTTTTCAACAACTTCGGCATTAACAGATTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgtatttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccag