Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttgactatgtcatttttattttgaagttcatagattgcttcgctgttaatttttttttaattttcatgcttattcaccaactcgatcagcgatttctttaatcatgctttcttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 4
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttgactatgtc-atttttattttgaagttcatagat-tgcttcgctgttaatttttttttaattttcatgcttattcaccaactcgatcag--cgatttctttaat------catgctttcttgaag--------------------------------------------
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GTGTTGCAAGGCCACCTGCAGAAGGTAGGGGCCGCAATCAATTACTTCCTCGATATTGGCCTAGAATAACAGACCAAGAGCTACAGCAAATTTCTGGAGAgtatcctt-attatatttatcaacttcttggtgatattatgcataagtagctaacatactttgcgtataatacaatctctgtaactga-tcaatcagggcgaattatttcatattgtgcatacctatttctgatctggatgctattttggttttccttaactatatttctcttcaag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 4
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttgactatgtcatttttattttgaagttcatagattgcttcgctgttaatttttttttaattttcatg-cttattcaccaactcgatcagcgatttctttaatcatgctttcttgaag---------------------------------------------------------------------
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GTGTTGCTAGGCCACCTGCTGAAGGAAGGGGCCGCAATCAATTACTTCCTCGGTATTGGCCAAGAATAACAGACCAAGAGCTGCAACAAATATCTGGAGAgtatccttgataaggtctccatacatttgaaact-gtgaacttcctgg-tgacattgatctcagacatttagtaacttatacatcaaggctctagaatagctcattaggcttaaacccttataatatgatgcataaatttcttgtgtaacagatatagtttttcttttatcttccttgactatattttgcaag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 4
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttgactatgtcatttttattttgaagttcatagattgctt-cgctgttaattttt--ttttaattttcatgcttattcaccaactcgatcagcgatttctttaatcatgctttcttgaag-------------------------------------------------------------------
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GTGTTGCTAGACCACCTGCTGATGGAAGGGGACGCAATCAATTACTTCCTCGTTATTGGCCAAGAATAACAGACCAAGAGCTGCAACAGATATCTGGAGAgtatccttgataaggctttcatgcatttgaaattgtcaacttcctggtgacattgatctttgacatttagtaccttataaatacaa-ggctccagaagagctcattaggcttaagcctgtataatatgctgcataaattctttttgtaacagatgcaggttttgttttatcttccttgactatattttggaag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G04330.1 (Glycine max), 5'ss of exon 6
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatcc----------ttgactatgtcatttttattttgaagttcatagattgcttc-----gctgttaatttttttttaattttcatgcttattcaccaactcgatcagcgatttctttaatcatgctttcttgaag
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------------CACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACCGATCAAGAGTTGCAACAAATATCAGGAGAGTATCCAGCGTTgtaattagttctataaattattattaatcactggcaggatacttacacaggttaataaacttattattattttgatagctactctttaccttagt-atttccttaaccattcatgatatgttcaag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G32810.1 (Glycine max), 5'ss of exon 9
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatcc----ttg-actatgtcattt---ttattttgaa--gttcatagattgcttcgctgttaat---ttttttttaattttcatgcttattcaccaactcgatcagcgatt--tctttaatcatgctttcttgaag
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------------CACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGAGTATCCAACATTgtaatctgtcctataaattattatgaatcactgacaggatacttactggttgatacacttattattattttgatagctaatctttaccttagtatttccttaaccatgattcatgatatgttcaag
upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S31_242V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATA---TCTGGAGAgtatccttgactatgtcatttttattttgaagttcatagattgcttcgctgttaatttttttttaattttcatgcttattcaccaactcgatcagcgatttct--ttaatcatgctttcttgaag
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---TAGCGCGGCCACCTGGAGAGGGAAGGGGTCGCAACCAGTTGCTACCTCGTTATTGGCCTCGAATAACAGACCAGGAGCTGAAGCAGATCAATTCTGGAGAgtatccttt-ctaagtt-tgtttattcaaatttgtgtaaataggggttacggga----ttcagtgagtttcgagtatcattac-aatctaatcttcagttttcacttgacaatgcattacag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917866|gb|CN547195.1|CN547195EST: CGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGA CTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGA
genomic: CGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttga ... tttcttgaagCTCAAATTCCACCATCGTACCATTATTTGAAAAGATGCTAAGTGCCAGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTGCAAGGCCACCTGCAGAGGGACGGGGTCGGAATCAGTTGCTTCCTCGTTATTGGCCGAGGATCACAGACCAGGAATTGCAGCAAATATCTGGAGAgtatccttgactatgtcatttttattttgaagttcatagattgcttcgctgttaatttttttttaattttcatgcttattcaccaactcgatcagcgatttctttaatcatgctttcttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA