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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAGCGCTGCAATTGGAATAGCTGCAACATTTGTGTACCCAATCTTACAATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAGgtatcaatttcagtggtctaaaaatggttcattttggtggttaaaatataagtgtttccttgaagttacatgcctagaaactagtcatgctttcaattgttccaggtgctactgagaagttatttctcctcaaagttactactacttgctgaccactatttatgtgaattatgttggtatctgtgtggttttcttgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00730.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00730.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G05190.1 (Glycine max), 5'ss of exon 5
AATAAGCGCTGCAATTGGAATAGCTGCAACATTTGTGTACCCAATCTTACAATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAGgtatcaatttcagtggtctaaaaatggttcattttggtggttaaaatataagtgtttccttgaagttacatgcctagaaacta-gtcatgctttcaattgttccaggtgctactgagaagttatttctcctcaaagttactactacttgctgaccactatttatgtgaattatgttggtatctgtgtggttttcttgcag
||||||||||   |||||||||||||||||| |||| || ||  |  |||| ||||| || |||| | || |||||||||| ||||| || ||||||||||||| || || |||  |  |   |  |||   | |     | | |  ||   | ||    |     |   |   |  |||||    ||    |   ||||||  ||      |  | | ||  | | || | | | ||  || | |    | | |   || | |||   || |  |  | | ||| || | | |  | ||
AATAAGCGCTCTGATTGGAATAGCTGCAACAATTGTATATCCTCTGCTACAGTCTCATATATCAAGTATTAGAACTGGACTGTGGTCTATATGGTCTCAGgtataaaatt-agtaattgatctaaagttttctgtataaatgacatgattgctattcaaatattcatttttctttgtaaactgtaacagatgtattattgttatag------catataggtagtgtttctttacactt--tattcccatatcatcctaatctttgttg-ttgtccttatttatgtatgttgtgcacgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548317|gb|CF516549.1|CF516549
EST:     AATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAG                         TGGGCCTTCCTCCTATTATGTGTTGCTTCAATATGGATCCATAACCATATC
genomic: AATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAGgtatcaattt ... tttcttgcagTGGGCCTTCCTCCTATTATGTGTTGCTTCAATATGGATCCATAACCATATC
EST: gi|34547989|gb|CF516221.1|CF516221
EST:     AATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAG                         TGGGCCTTCCTCCTATTATGTGTTGCTTCAATATGGATCCATAACCATATC
genomic: AATCTCACATCTCAACTCTTCGAACTGGACTTTGGTCCATCTGGTCTCAGgtatcaattt ... tttcttgcagTGGGCCTTCCTCCTATTATGTGTTGCTTCAATATGGATCCATAACCATATC