Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc...

Basic information

species Vitis vinifera
transcript Vv08s0058g00390.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23730.1 (Glycine max), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgt-ctgtattttccttctattaaatttca--aattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc
|||||||||| || || || ||||||||||||||||| || || |||||||| || || |||||| | ||||||||| | |||||||| ||||| ||||| || |   ||  ||   || |||||     ||   |  ||    ||  ||   |||     |   |  ||| || ||||| || |   |      ||||  
ATGTTGTATCAATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGTCGATTCCGTCTCCACTCAGTCAGGGATGACGAGGCTAAGgtactcttggttggttacgttgaatttttttcatccttccctacccctagatgctattacactattctttgtg-gattcattttgttaagttcttgtttgt--

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G06170.1 (Glycine max), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGg---tctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc--
||||||| || || || || ||||||||||||||||| || || |||||||| || ||||||||| | || || || || |||||||| ||||||||||   | | ||| |   || |||| ||| |     ||||||      | ||  |    ||   |   | |  ||||  |   |    |||  ||||    ||||  
ATGTTGTTTCAATCCCAAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAGgtactttttatatggtttatattgaatattg---tgattatgagggc-gagccctggtgcagcggtaaagttgtgccttggtgacttgttggtcatgg-gttcga

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G05370.1 (Glycine max), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgt-ctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgct-gtctgtcacattgttc
|||||||||| || || || ||||||||||||||||| || || |||||||| || ||||||||| | || |||||| | |  ||||| ||||| ||||| || |  |||  ||  ||| |||||     |  || | |   |  ||| | ||| ||||    |   |        ||| | |  | | | | |||    
ATGTTGTATCAATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgtttggttacattgaatttttccatcctttcctacccccaattacatt-attctctgtggattcattgtgttaagttcatgttttatattaaa-

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgt----ctgtattttccttctattaaat-ttcaaattgatt-actttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc
||||||| || || || || || |||||||||||||| || || |||||||| || ||||||||| | ||||| ||  | |||||||| |||||||||||     | ||| |   || |||||||| |||  ||| |||  |      || |  |  ||  |     |||  ||    |   | || ||||| ||   |     
ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtatttttttatatggtttatattaaatattctgattcatttgcagcctatgtactattttactattgtatagttgactctagctttgttgtct-tcggtt-----

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ26570 (Selaginella moellendorffii), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc
||||  |  |  |   ||||    ||||||||| ||||||||| |||||||  |||||||||||||   | ||||| || |  |  |||||||| ||||      |  || |||  | | || || || |  || ||||  | | |  || ||  ||     |  |||| ||                          
ATGTGTTGACGGTCGGCAAGGTGGATGAGAACTACCGTCTCCTCTATGACAGCAAGGGCCGATTCACCTTGCACTCGATCAACGCCGAGGAGGCCAAGg------tactcattcactcacatctccaagtactttcttt--ccgtagtaactttgtt-----ttggtgtcaacag-----------------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 4
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc
||||  |  |  |   ||||    ||||||||| ||||||||| |||||||  |||||||||||||   | ||||| || |     |||||||| ||||      |  || |||  | | || || || || || ||||  | | |  || ||  ||     |  |||| ||                          
ATGTGTTGACGGTCGGCAAGGTGGATGAGAACTACCGTCTCCTCTATGACAGCAAGGGCCGATTCACCTTGCACTCGATCAACTCCGAGGAGGCCAAGg------tactcattcactcacatctccaagtgctttcttt--ccgtagtaactttgtt-----ttggtgtcaacag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701499|gb|EE079143.1|EE079143
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110429081|gb|EC995569.1|EC995569
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110383286|gb|EC947651.1|EC947651
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110387389|gb|EC952050.1|EC952050
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110380109|gb|EC945352.1|EC945352
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110727191|gb|EE103670.1|EE103670
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|161714436|gb|FC064435.1|FC064435
EST:     ACACAAAGGTCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110378441|gb|EC943573.1|EC943573
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|349830589|gb|FQ416887.1|FQ416887
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATGCCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110374748|gb|EC939675.1|EC939675
EST:     CACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACC
genomic: CACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGC-AAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACC
EST: gi|110364287|gb|EC923785.1|EC923785
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|37188096|gb|CF607447.1|CF607447
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110377925|gb|EC943028.1|EC943028
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110409306|gb|EC974966.1|EC974966
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|161714548|gb|FC063544.1|FC063544
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|161719924|gb|FC065787.1|FC065787
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAGGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|351017691|gb|FQ436044.1|FQ436044
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|37184024|gb|CF603378.1|CF603378
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|352795435|gb|FQ476550.1|FQ476550
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110688704|gb|EE067560.1|EE067560
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110701825|gb|EE079837.1|EE079837
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110727581|gb|EE104508.1|EE104508
EST:     ATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAA-GCATACCA
genomic: ATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110374495|gb|EC939285.1|EC939285
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110698624|gb|EE076338.1|EE076338
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110710513|gb|EE086912.1|EE086912
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|71868661|gb|DT017716.1|DT017716
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110388553|gb|EC953316.1|EC953316
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|351034241|gb|FQ448038.1|FQ448038
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110690211|gb|EE067114.1|EE067114
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|352764798|gb|FQ471858.1|FQ471858
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|161717451|gb|FC069225.1|FC069225
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|33405551|gb|CF211178.1|CF211178
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|33408549|gb|CF214176.1|CF214176
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|351018729|gb|FQ425631.1|FQ425631
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110369231|gb|EC933385.1|EC933385
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|161718530|gb|FC065367.1|FC065367
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110422691|gb|EC989019.1|EC989019
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|33405639|gb|CF211266.1|CF211266
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|351022061|gb|FQ437848.1|FQ437848
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|349832530|gb|FQ421091.1|FQ421091
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|352782570|gb|FQ476650.1|FQ476650
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110688682|gb|EE067514.1|EE067514
EST:     ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: ACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
EST: gi|110686832|gb|EE063712.1|EE063712
EST:     GGGCCGATTCAGACTCCTCTCAATTAGGGATGAGGAGGCAAAG                         TTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA
genomic: GGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattt ... ttgtctgcagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgtctgtattttccttctattaaatttcaaattgattactttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa