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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTTTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCTAATGATCTTGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttttgacattatcttgtgattgtacttgtgatatggaagtaaatgatttcctttatccaagttgatttgtgctagaactgatgttcttgttgtcgtgtag

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400294|gb|EC966852.1|EC966852
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|352773499|gb|FQ472281.1|FQ472281
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|110402853|gb|EC963625.1|EC963625
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|110688611|gb|EE067363.1|EE067363
EST:     TGCTGCATCTCTTANCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|156735832|gb|EV239953.1|EV239953
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAACTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|33408742|gb|CF214369.1|CF214369
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|161721618|gb|FC070828.1|FC070828
EST:     GAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: GAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
EST: gi|110719746|gb|EE095143.1|EE095143
EST:     TGCTGCATCTCTTAGCGTCCTACAGGAACTTGAGAGCATTGTGGGCAAGG                         ACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC
genomic: TGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttt ... tgtcgtgtagACAAACTTGTGGTCTCCACCTCCTGCTCTCTTCTCCACACTGCTGTTGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCTTTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCTAATGATCTTGCTGCATCTCTTAGCGTCCTACAGGAGCTTGAGAGCATTGTGGGCAAGGgtattctttttgacattatcttgtgattgtacttgtgatatggaagtaaatgatttcctttatccaagttgatttgtgctagaactgatgttcttgttgtcgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA