1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgttctcttgatgtaaatattctatggattgatgcctctgtttctgcttttgctttgggtctttttttcttcctaatttttaatcctcctcatgaagattaacttcttggttctgtggatcttatgcttatttttttcctccctctctaccttgattggtgatgttcag
species | Vitis vinifera |
transcript | Vv08s0056g00440.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAAGCATTGTCACGGAAAGAAGTTCATEST: gi|37184416|gb|CF603770.1|CF603770
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|30253236|gb|CB970787.1|CB970787
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|110729839|gb|EE106235.1|EE106235
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAA GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|110368592|gb|EC932580.1|EC932580
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: CAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|161721710|gb|FC071108.1|FC071108
genomic: CAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAAGCATTGTCACGGAAAGAGGTTCATEST: gi|22011953|gb|BQ796987.1|BQ796987
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: AGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|110390287|gb|EC955189.1|EC955189
genomic: AGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|110396248|gb|EC961929.1|EC961929
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|30253079|gb|CB970630.1|CB970630
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATEST: gi|161719084|gb|FC069337.1|FC069337
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
EST: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAG GTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
genomic: TAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgtt ... tgatgttcagGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGgtatgatgttctcttgatgtaaatattctatggattgatgcctctgtttctgcttttgctttgggtctttttttcttcctaatttttaatcctcctcatgaagattaacttcttggttctgtggatcttatgcttatttttttcctccctctctaccttgattggtgatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA