1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTTGAAGCTTCCCAATCATTACCTTGTTTCTCCTCCAGAGATAGAGAGAACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggcagataatgaattgtgttatcatcaagaactaaaattaattattattatttgttgaagttaactatttgttctttttcatcaacattcatt...
species | Vitis vinifera |
transcript | Vv08s0056g00200.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110361200|gb|EC924656.1|EC924656
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: TTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110720573|gb|EE096613.1|EE096613
genomic: TTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|30252044|gb|CB968683.1|CB968683
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110366484|gb|EC930392.1|EC930392
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: TAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|30301264|gb|CB978058.1|CB978058
genomic: TAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: TGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110719729|gb|EE095112.1|EE095112
genomic: TGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ATATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|33406588|gb|CF212215.1|CF212215
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|161712531|gb|FC061836.1|FC061836
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110724634|gb|EE100633.1|EE100633
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|161721567|gb|FC070103.1|FC070103
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110690736|gb|EE068154.1|EE068154
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|33403584|gb|CF209211.1|CF209211
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110357218|gb|EC920600.1|EC920600
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110361556|gb|EC925038.1|EC925038
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110709676|gb|EE085346.1|EE085346
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|29783243|gb|CB349288.2|CB349288
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|30301324|gb|CB978118.1|CB978118
genomic: ATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|30251262|gb|CB968995.1|CB968995
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|110717711|gb|EE093807.1|EE093807
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: GCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTCEST: gi|33409359|gb|CF214986.1|CF214986
genomic: GCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
EST: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAG TGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
genomic: ACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggc ... tctttaacagTGAGACTGTCAAATTTGGTCATGTTACCTTTTTCTGGAATGGAAATCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGAAGCTTCCCAATCATTACCTTGTTTCTCCTCCAGAGATAGAGAGAACATCTGGTGAATATTTAGTGCACAATGGTGTTCGTACTTTTGCTTGCAGgtaaggtggcagataatgaattgtgttatcatcaagaactaaaattaattattattatttgttgaagttaactatttgttctttttcatcaacattcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa