1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctattcatcaatactgtttcctgcccattatccatttttaggatcaagaactcactggttggatcttccagttatcttggtatgaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacag
species | Vitis vinifera |
transcript | Vv08s0040g02360.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAG CAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAEST: gi|161717278|gb|FC069183.1|FC069183
genomic: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctatt ... ggtcctacagCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
EST: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAG CAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAEST: gi|30137753|gb|CB923091.1|CB923091
genomic: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctatt ... ggtcctacagCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
EST: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAG CAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAEST: gi|37188929|gb|CF608278.1|CF608278
genomic: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctatt ... ggtcctacagCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
EST: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAG CAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAEST: gi|46918095|gb|CN547424.1|CN547424
genomic: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctatt ... ggtcctacagCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
EST: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAG CAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
genomic: GGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctatt ... ggtcctacagCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGgtatcctattcatcaatactgtttcctgcccattatccatttttaggatcaagaactcactggttggatcttccagttatcttggtatgaaatggaaagaaaatcaaataccagtggtgcactcatgtagacacatgttttattattgcaaattcttgattaatccctgatggaattggtcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA