Sequence
atgc intronic sequence ATGC exonic sequenceATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatggtcttccatttatgctaactttactttagttcttcttacttcttccatccagtcaccctcccctaggtgcattgggttatcccaaaaattggatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G36300.1 (Glycine max), 5'ss of exon 5
ATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatgg-tcttccatttatgctaactttactttagttcttc--ttacttcttccatccagtcaccctcccctaggtgcattgggttatcccaaaaattggatt------------------------------------------------------
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ATATAACTGTCCTTCGTATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAgtacggattttctgtctgggctataattgttttgcatttacagatataactgaagtttgatcatgattttgtatgcatattatgttgtccttcagttaggcttaggcattaacataatgttgttttcgctgctgtattccttcaattgtttgggtag
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G33590.1 (Glycine max), 5'ss of exon 5
ATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatgg-tcttccatttatgcta-----actttacttt-agttcttc-------------ttacttcttccatccagtcaccctcccctaggtgcattgggttatcccaaaaattgg-att------------------------------------------------
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ATATAACTGTCCTTCATATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATACCAGTACTTTTACAAgtatggattttctgtctgtgctataattgttctgcttttaattttttagtcttgagaaagttgttactgaagtttgatcatgattttatatgcaaattatgttgtccttgagttaggcattaaacataatattgttttcgctgttgtatttcttcaattatttggatag
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G09720.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatggtctt-------ccatttatgctaactttactttagttcttctt------------acttcttccatccagtcaccctcccctaggtgcat---tgggttatc----ccaaaaattggatt------------------------
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GTATGGCTGTGAAGGATACATATTACGCAATTTGGCTGAACTAGGATTTAAAGAGCCTACCCCAATCCAAAGACAGGCTATTCCAATTCTCCTATCGgtatggtcttattcactccttttccatttattacactggagtcacttaagagcagagaaagaactcctttgtccag--attattttgtgaattcttttatggggtatcagttctaatatttagttttatcatcttttttctttatcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856373|gb|DT005428.1|DT005428EST: TTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCT GGACGCGAATGCTTTGCTTGTGCTCCTACTGGATCTGGAAAAACCTTGGCT
genomic: TTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatggtctt ... tctgtgttagGGACGCGAATGCTTTGCTTGTGCTCCTACTGGATCTGGAAAAACCTTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatggtcttccatttatgctaactttactttagttcttcttacttcttccatccagtcaccctcccctaggtgcattgggttatcccaaaaattggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatt