1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACAGGCTTGTCTGAAGATATGATGTCAAAGTGCTTGACCGAAACAATATATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaatttgacttgagtttgaacctaggtaacatttgagctaggagttcttattttcaaccagccaacatgatcattgtagagaaataggccagtggt...
species | Vitis vinifera |
transcript | Vv08s0040g02160.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|28962111|gb|CB341144.1|CB341144
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAGCATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110698522|gb|EE076116.1|EE076116
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|71880900|gb|DT029955.1|DT029955
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTAGGACACTGAGCGCATGCCGCCATEST: gi|110360203|gb|EC922989.1|EC922989
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110359745|gb|EC921816.1|EC921816
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110359702|gb|EC921626.1|EC921626
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110359655|gb|EC921489.1|EC921489
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|71883091|gb|DT032146.1|DT032146
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAATAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|22015326|gb|BQ800360.1|BQ800360
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATTAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110358811|gb|EC923300.1|EC923300
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|77583866|gb|DV220970.1|DV220970
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|77578962|gb|DV218312.1|DV218312
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|32460924|gb|CD802098.1|CD802098
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|71886918|gb|DT035973.1|DT035973
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|71879182|gb|DT028237.1|DT028237
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|110375438|gb|EC940426.1|EC940426
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATEST: gi|28961515|gb|CB340765.1|CB340765
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
EST: ATTGTTCATTTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTG GATGAGTACAAGAGCATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
genomic: ATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaattt ... attttgacagGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAGGCTTGTCTGAAGATATGATGTCAAAGTGCTTGACCGAAACAATATATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGgtaagaatttgacttgagtttgaacctaggtaacatttgagctaggagttcttattttcaaccagccaacatgatcattgtagagaaataggccagtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaa