Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagagaccatctatattccattattgaatgctttcctgcatatgagagcttgattcgttctgcatgtggactgaccaatttatctttgccatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G05420.1 (Glycine max), 5'ss of exon 6
GTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagagaccatctatattccattattgaatgctttcctgcatatgagagcttgattcgttctgcatgtggactgaccaatttatctttgccatgtag-
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GTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTGgttagtaaaggctatttatatt---tgtttggattttttt--------------ttaatatcttatgtatgtgctggagctgatctacattttttgtcaaag
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23840.2 (Glycine max), 5'ss of exon 5
GTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagagaccatctatattccattattgaatgctttcctgcatatgagagcttgattcgttctgcatgtggactgaccaatttatctttgccatgtag
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GTGGTCTTTATTAGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATTTTTTTAGAAGCCTTGgttagtaaaggctatttaca----gttatttgggattttttttaatatc---------ttctgtatgtgctggagctgatctacat-tttttgtcgcaaag
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G36960.3 (Arabidopsis thaliana), 5'ss of exon 6
GTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagagaccatctatattccatt--attgaatgctttcctgcatatgagagcttgattcgttctgcatgtggactgaccaatttatctttgccatgtag
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GTGGTCTTTGCTTGAAAAGTATAGCTGCAAAGCTTCAAAACTTCATCTCAAGCCCCGGAGATTCAAACTATTTATAGAGGCCTTGgttagttggcaa-atgcgaatttcgtttaacccaaaaccaccttggatttgacaaggaatcgtttacaaactattgtctaacaaa---accttttgcatgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28963174|gb|CB342207.1|CB342207EST: CAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTG GAGCACCAACTATTGAAAGACCGAAAAAAGAATATAAGAAAACGACCTTCC
genomic: CAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagag ... tgccatgtagGAGCACCAACTATTGAAAGACCGAAAAAAGAATATAAGAAAACGACCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTCTTTACTGGAAAAATATAGCTGCAAAGCTTCAAAACTTCATCTGAAACCCCGGAGGTTTAAGATTTTCATAGAAGCCCTGgttagtagagaccatctatattccattattgaatgctttcctgcatatgagagcttgattcgttctgcatgtggactgaccaatttatctttgccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC