Sequence
atgc intronic sequence ATGC exonic sequenceCAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtcgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os07g34950.1 (Oryza sativa), 5'ss of exon 5
CAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttac-ttgtaagtcgttgcttatggttttattagaaagtac-agttatattatcaaatggctgaaacag
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AAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGgtaacattttgttattcaatctagcagttaacaataaattacatattcatagtgatgttttttttttgtcctcctgattctacaattagaagagcactaa--
upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G06430.2 (Glycine max), 5'ss of exon 5
CAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttacttgtaagt--cgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacag
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GAATTTCAATGTTGGTGCTACGGTTGATTTGGATGTCCCACGTAGCTTTTGGAATCGCTTGGCTGGGAAGTATGGGAACATTTTCTATTGGAAAGAAAAGgtagtctc------ttgcttc--tcagtgtagct-atttttaattagcctagttaacggtttaacttaacacca-aatgatacag-----------------
upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 5'ss of exon 5
CAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtcgttgcttatggttttattagaaagtacagttatattatcaaatggct-gaaacag-
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GAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagc-----tacctcgattaaaaaaaccgatgatcgccactttctttgtt-ttttgtttgcatgtctaaactgtttacaatatggcttgaaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689960|gb|EE066639.1|EE066639EST: GGACCCGTTTGGCTGGGAAGTATGGAAATATATTTTACTGGAAAGAGAAA GGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCA-TATCAAATTGCTTG
genomic: GGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcac ... gctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTTCAATGTGGGGGCTTCAGTTGATTTAGACATTCCACGTAGTTTCTGGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtcgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA