1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTAGCAGATGCAAAGGATGTAATGGAAGCCATTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAAgtaagctgtcttttatggatgaatttgcacttgtaacctgatgttcaatttgtttggatgaaattgctgattttggtaatgttttgttttag
species | Vitis vinifera |
transcript | Vv08s0040g01170.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAA GGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCCEST: gi|161706899|gb|FC056793.1|FC056793
genomic: TTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAAgtaagctgtc ... tttgttttagGGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCC
EST: TTCGAACTGTTGAAGGTGGTAGATTT-CTGTGTTGACACCTAATCTTAAA GGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCCEST: gi|110402734|gb|EC960886.1|EC960886
genomic: TTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAAgtaagctgtc ... tttgttttagGGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCC
EST: TTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAA GGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCC
genomic: TTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAAgtaagctgtc ... tttgttttagGGCTTTGAAGCAGCTGTTGCAGCTGGAGCTAAGGAAGTGGCCATCTTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGCAGATGCAAAGGATGTAATGGAAGCCATTCGAACTGTTGAAGGTGGTAGATTTCCTGTGTTGACACCTAATCTTAAAgtaagctgtcttttatggatgaatttgcacttgtaacctgatgttcaatttgtttggatgaaattgctgattttggtaatgttttgttttag
- - - - - - - - - - - - - - - - - - - - TTGAAG