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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag

Basic information

species Vitis vinifera
transcript Vv08s0007g08960.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
|| |||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||| | |||||  | ||  | |||||||| || || ||||||| ||||| |     |  |  || || || | | ||   ||||| | |  |||   ||  || | ||| || | | |  ||  |  |                | | |                                
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtgagggcaacattatag-tattcatctgatgctatgtatttccattaa--gtggttctccatgatctccaagacagtactaatgttttgctcttccgtcacag-------------------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
|| |||||||| ||||| ||||| ||||||||||||||||| || ||||| || ||| | |||||  | ||  | |||||||| || || ||||||||||||| |     |  |  || || || | | ||  |||||| | |  |||   ||  ||   ||| || |      |||||    ||| | ||||| |  |        | | |                       
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtgagggcaacattatag-tattcatctgataccatgtatttccattaa--gtggttccccatgatct-----ccaaca----cagtactaatgtttctctcttccgtcacag----------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 5
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtact-tttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
||||||||||| ||  ||||||| || |||||||||||||||||| | || |||||| | || || ||  | || |||||||| || |||||||||| ||||   || || ||    ||||    | | || | ||    || ||| ||    ||| |||| |    |||   ||      |   |  || | |  ||   ||  ||                             
GGCCGTGCAGTTTACTTAAACATCCAGAAGTTTGTGCAGTTCCAGCTTACAGTTAATATTGTGGCTCTGATTGTGAATTTTGTCTCAGCGTGCATCATAGgta--ttagcacactt-gctaccactctaatattat----tgatctaatgatgactgtttgaaatgaatgtgtattgttttctagaataa-attcgtatgcattttat----------------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G29010.1 (Glycine max), 5'ss of exon 6
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
|| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||| || ||  | || ||  ||||||| |||||||| |||  |||||   || ||  | || ||  | ||| || |  || |   ||||||   ||     || |||          | ||      |  |   |                                      
GGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggttaatagaatttgttttccc-ttttattttctgttga-atttgt---ttcaagcaacatg------ggtgatagtcttccttctttcag-------------------------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G31770.1 (Glycine max), 5'ss of exon 3
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
|| ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| ||||| || ||  | || ||  |||||||||||||||| |||  |||||   || ||  | || ||  | |||    || | || ||   | |  |||     || |||      |              |                                            
GGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGgtttgttggttaatagaatttgttttccctttt---ataat-ctgttgactttg-tttcaagcaacatggttgatagtcttccttctttcag-------------------------------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag
|| ||||| ||||||||||||||||| |||||||| ||||||||| | || |||||||||||||| ||  |  | || ||||| ||||| |||||||||||| ||   |   |   |   |  |      |||| | ||| | |  |  |   | | | | | |  ||  |  |      |     ||                                               
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtt--tggtcaaa-tatagta-accatttcttttggtttcttttccag----------------------------------------------

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S37_351V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCCGTGCAGTATATATAAACATTCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTGGTTGCGCTTGTAGTAAATTTTGTTTCTGCGTGCATCACAGgtgcgttggcc-catggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcag------
|| ||| | || |||| |||||||||||||||||| ||||||||| | || |||||  ||||||| || ||  | |||||   ||| || ||||| ||||||   ||  |   || | |||  ||  ||  ||| |  ||  |     |     |  | | |  |||   |||   |     ||       | ||||  |  | ||  ||||         |   || || ||  |      
GGTCGTTCTGTGTATACAAACATTCAAAAGTTTGTACAGTTCCAGCTTACTGTTAACCTGGTTGCTCTGGTCATTAATTTCAGTTCCGCTTGCATTACAGgtaaattttcagtattgcgcttctcggtttttttgaattaaaggagacagac-catgtatac-caatgaaccacctagtttaagagatcccagtgatttt--tcattgtgatcttacatacttgtacgacgttttgtcccag