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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 5
GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaac-atttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||| || ||||| |||||||||||||| || || || |||||||||||||||||| ||||| |     ||   || |||    || |||    |  |   |||    ||   || | |||| | |  |  |     | |  ||| | |    ||||| | |   |      || |   |  | |                    
GGTGCAAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAGGGAAAATGCGACGTTGCAATTGTTGgtaagggcacaag-gcacatgttttcctg----taacttga--tgaaaagcttgc-catgtgattt-tgaatatatgttctccaagtgtgtattttgatttgtttgtgactataaaaaggtatcccacattgcag-------------------

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 4
GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaag--agcacatgcattaataacttgctgatgttagcttcgcttttagtacttat-gtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag
||||||||||||||||| |||||||||||||||||||||||||| || |||||| | || || || |||||||| ||||| ||||||||||||||||||||||||  |     |  ||||   | |     || |  | |   | | |   | || | || || ||  ||   | | |    ||      || ||                                                             
GGTGCAAATTCCAATATTCAGGAAAGAGCCAAGGCTTTGGAAGTTATACAGTTTCTGAAAGAAAAATATCATGAAGGGAAATGTGATGTTGCAATTGTTGgtaaggcaatttttctattatgtattccagtatttctgttcttcatctgcaattttttgtttttaacttc---ataaaatctatcccacattccag------------------------------------------------------------

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G21350.2 (Glycine max), 5'ss of exon 5
GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag
||||||||||||||||| |||||||||||||||||||||||||| || |||||| | || || || || ||||| ||||| ||||||||||||||||||||||||               || || |   | |||  |    ||| |||| || |||  |    |  || |||    |||||||  ||||  ||| ||| || | |     | ||  | ||                                
GGTGCAAATTCCAATATTCAGGAAAGAGCCAAGGCTTTGGAAGTCATACAGTTTCTGAAAGAAAAATACCATGAAGGGAAATGTGATGTTGCAATTGTTGgtaagg-------------caattttcc--tattatgta---tttcagtatttctgttctt--ccaatgcaca---ttcatttgttttttacttcataaaatctatc----ccacattgcag-------------------------------

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 6
GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag
|||||||| ||||||||||||||||||||||||||| ||||||| || ||||| || ||||| ||  |||||||||| || ||||| |||||||||||||||||| ||| | |     ||   || |      | | |             |    | || ||| | ||| |    |   | || ||||| |||       ||||| | |   |       | |   |  | |                    
GGTGCAAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATACAGTTGTTGAAGGAAAAACATCATGAGGGAAAATGTGACGTTGCAATTGTTGgtaagggcaaaag-gcacatgttttcccatcacttgatgaaaagcctaccatgtgattttgaatatatgatctc--caagtgtgtattttgattt-----gtttgtgactataaaaaggtgtcccacattgcag-------------------

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTGCAAATTCCAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTAATTCAGTTTTTCAAGGATAAGTATCATGAGGGGAAGTGTGATGTTGCAATTGTTGgtaagagcacatgcattaataacttgctgatgttagcttcgcttttagtacttatgtattcaatctctgaacagagctcatttgcattttcattcttaacatttgtaattgctactcttcattcattaacgtaaatgatgtttgcaatgccag
||||||||||| || || ||||| |||||||| |||||||||||  |||||| ||| || || |||||||| || || |  ||||||||||| ||||||||||||  ||  ||||       ||| || | |||  |||    |  |  |    ||| || |  ||   |  | || |  ||||  | |  |  ||||   | | || |   |||| | |    || |  |                      
GGTGCAAATTCAAACATTCAGGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTAAAAGACAAGTATCACGAAGGAACTTGTGATGTTGCGATTGTTGgtaagc-caattgcacctt---cttcctca-gtttcctttaagtcaatgaacagtgttttaatacttaaagaataggt--tttgtgtgtggaaactta---tctatattca-tactttcctgctataacag----------------------