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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagcaaatgtgtttcccttctttttttttttttaggcttgccggatcagcctctaatctgctttccttctcag

Basic information

species Vitis vinifera
transcript Vv08s0007g07960.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G31080.1 (Glycine max), 5'ss of exon 5
AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagcaaatgtgtttcccttctttttttttttttaggcttgccggatcagcctctaatctgctttccttctcag
| || |||||||| ||||||||||||||||| || || ||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||         ||        | |||| ||   |   |  |  | | |     |    | |||            
AAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATATGAACAGgtaaaaacattgtgatgaggaagaaccttttattggatacagaatttcagtttgatattccctttgcag----------

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 5
AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagca-----aatgtgtttcccttctttttttttttttaggcttgccggatcagcctcta-atctgctttccttctcag
| || |||||||| |||||||||||||||||  | |||||||| |||||||| ||||||||||||||  ||||||| |||||||||||||| ||||| |||||  | ||||     ||| ||     |   |      | ||| |         | |     ||   |  |   | ||||  |||
AAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGgtaagaaagcattgtgaatttgagatgcgcatgagccgtatttgaaaaggttgagcttgatatcaggagttatctccctttgcag

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G12350.1 (Glycine max), 5'ss of exon 5
AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagcaaatgtgtttcccttctttttttttttttaggcttgccggatcagcctctaatctgctttccttctcag
| || |||||||| || |||||||||||||| || || |||||    ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||| ||         ||        | |||| ||   | | |  |  | | |     || | |   ||| ||||  |||
AAGCTGATATTGAGGAATTTGAAGCAAACTATAGGGGGTCTGACATTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAACGGTAATATGAACAGgtaaaaacattgtgatgaggaagaaccttttgttggataaagaatttcagtttgatatcgagta-acttccctttgcag

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G06910.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagcaaatgtgtttcccttctttttttttttttaggcttgccggatcagcctctaatctgctttccttctcag
| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || | ||| ||||  |||||||| |||||||||||    | ||        ||| |||||||   | || | |   |   |  |     | ||      ||| |||| |||
AAGCTGATATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAAGACTTGCTTGAGCTTTTCAACAAGTTTAAGGGTAAAATGAACAGgtaattcatca--------tcctttcttttcgatattgttgaggttgtgagttgatttatatatatattttcttcccag

upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGATTCAGAGAAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgta--caatagcaaatgtgtttcccttctttttttttttttaggcttg---ccggatcagcct--ctaatctgctttccttctcag
||| |||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||||| || || || ||||  |||||||| |||| ||||||   |||        ||||| | || || |    ||| |  | |       | || | | |   |  |    | ||  | ||||
AGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAATGAGCAGgtaattaatcatccccttgttttcattattgtcaagtttgtgagttgaagtttgtataaacattattggtactatatctctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297265|gb|CB974059.1|CB974059
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACCCCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351015510|gb|FQ447339.1|FQ447339
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|349825564|gb|FQ419481.1|FQ419481
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|30297223|gb|CB974017.1|CB974017
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|352794289|gb|FQ479531.1|FQ479531
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351028672|gb|FQ446345.1|FQ446345
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351054628|gb|FQ456825.1|FQ456825
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|110686833|gb|EE063714.1|EE063714
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTCTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|349827514|gb|FQ422382.1|FQ422382
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|110701183|gb|EE078491.1|EE078491
EST:     AAGAATGATTTGATTGAGCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTTTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351048863|gb|FQ431528.1|FQ431528
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351023284|gb|FQ432667.1|FQ432667
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
EST: gi|351040488|gb|FQ434621.1|FQ434621
EST:     AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAG                         GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT
genomic: AAGAATGATTTGATTGACCTGTACAAAAAGTGCAAGGGTAATATGAACAGgtacaatagc ... tccttctcagGCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATT