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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgtatatataagaaactaaactcaaaactaaacattcagcacaattgagttatgatcttcctttaatactctctttttcttttgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g07810.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g31300.1 (Oryza sativa), 5'ss of exon 4
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgta-tatataagaaact-aaactcaaaactaaacattcagcacaattgagttatgatcttcctttaatactctctttttcttttgcag-------------
|||||||||||||| |||||||| ||| | |||||||| ||||| ||||| || ||||| |||  ||| |||  ||||| ||  || ||||||  || |     || | || |||| ||   ||    |    ||||  || |    | | | |  |             
CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGGTCAAGgtaacatatatgagtctgaaactcccaattttgt-ttgatcaaaattcagaactgcgacttgcctaattgtcccgggatatataggtgatgtttagatcaa

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g31300.2 (Oryza sativa), 5'ss of exon 4
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgta-tatataagaaact-aaactcaaaactaaacattcagcacaattgagttatgatcttcctttaatactctctttttcttttgcag-------
|||||||||||||| |||||||| ||| | |||||||| ||||| ||||| || ||||| |||  ||| |||  ||||| ||  || ||||||  || |     || | || |||| ||   ||    |    ||||  || |    | | | |  |       
CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGCTCCAGAAGCAGgtcaaggtaacatatatgagtctgaaactcccaattttgt-ttgatcaaaattcagaactgcgacttgcctaattgtcccgggatatataggtgatgttta

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g39630.1 (Oryza sativa), 5'ss of exon 5
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgtatatataagaaac-taaactcaaaactaaacattcagcacaattgagttatgatct---tcctttaatactctctttttcttttgcag-----------
|||||||||||||| |||||| | |||||||| || || ||||| ||||| |||||||| |||  ||| |||     |  |    ||| |||     ||| |   ||    ||||        ||||   || | |    ||     ||   || |              
CAAACCAACACTGCTGACATGCTGGATTTGGCTGTTGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtaagctgattagctataatctcccttttaatcccgcaat-taattagaacgccatctatatcatctgtagcttgtaattagattagtcaacctatcctgg

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G085467_T02 (Zea mays), 5'ss of exon 4
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgtatatataagaaactaaactcaaaactaaacattcagcacaattgagtta-tgatcttc-ctttaatactctctttttcttttg--cag------------
|||||||||||||| |||||| | ||| |||||||||| ||||| ||||| |||||||| |||  ||| ||| ||      ||| |||   ||| |      ||     |      |    ||||     ||| ||| | |  ||    | | |  |||            
CAAACCAACACTGCCGACATGCTGGATCTGGCCGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtacatgcccacaaccaaaa--aaacccttcttttttctgccgcgaggccgctgataggaacttgaatgcacgattcagttatcgaccagaaatgcctccat

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G417597_T02 (Zea mays), 5'ss of exon 2
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgtatatataagaaactaaactcaaaa-ctaaacattcagcacaattgagttatgatcttcctttaatactctctttttcttttgcag---------------
|||||||||||||| |||||| | ||| |||| ||||| ||||| ||||| |||||||| |||  ||| ||||||      | | |||  || |  ||   |   |   ||   ||   || || |||   |  |   |    ||    ||| |                 
CAAACCAACACTGCCGACATGCTGGATCTGGCTGTGGACTACATCAAGGATCTTCAGAAGCAGGTCAAGgtatatgcccacatccaaaaccacattcttttctgccgagaccgctgg--taggaacttgaatacacgattgagttaagctttactaaggtagtggtaggtt

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G29830.1 (Glycine max), 5'ss of exon 6
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgta-tatataagaa-----------actaaactc---aaaactaaacat----tcagcacaattgagttatgatcttcctttaatactctctttttcttttgcag
||||||||||| ||||||||||| || ||||| || ||||||||||| || ||||||||||| | ||| |||  ||| |||||           || ||  |    ||| | | ||||    |||  |  ||||| | ||    ||| |  | |  |  ||  |||   |||||
CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtagcataaaagaagagaatacattacgaattttcaaaaagcaatacatcatgtcactattattgactcatttatttcttgcactcattcctcattcacatgcag

upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G12150.1 (Glycine max), 5'ss of exon 6
CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgta-tatataagaaactaaa--ctcaaaactaaacattcagcacaattgagttatgatc---------ttcctttaatactctc-tttttcttttgcag------------
||||||||||| ||||||||||| || ||||| || ||||||||||| || ||||||||||| | ||| |||  ||| |||||   ||   || | || |  | |  || |||| |   ||||  ||          ||  |||  | | ||| |||||| ||  ||             
CAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGgtaacataaaagaagagaatgccttacaaattcaaaagcatcaca-tcatgttactattgttgactcgtttattttttgcactcatttttcattcacaatttcacatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363334|gb|EC926912.1|EC926912
EST:     TGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAAT                         ACACTTACTGATAATCGAGCACACTGCAAGTGTTTAGGTAAGCAGAAACCG
genomic: TGTTAGATTTGGCCGTGGAATACATTAAGGACCTTCAGAAACAGTACAATgtatatataa ... tcttttgcagACACTTACTGATAATCGTGCACACTGCAAGTGTTTAGGTAAGCAGAAACCG