Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattag

Basic information

species Vitis vinifera
transcript Vv08s0007g07290.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G08010.3 (Glycine max), 5'ss of exon 5
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagta--accactaattc-actactattctgatatttt--ctgtgtttgtgtacaatattgtgaccttgatttactttcaattag-----------------------------------
|||| | |||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| || || ||||||||  | |  |  |   |  | | |  |||    |||| |    | ||  |||   || ||||||  | ||  ||| |||| |   |                                    
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgcttt--ttttcttttatagaagcatccttagtattgttcctgctttctcattacag

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G27010.2 (Glycine max), 5'ss of exon 5
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagta--accactaattc-actactattctgatattttc--tgtgtttgtgtacaatattgtgaccttgatttactttcaa--ttag-------------------------
     | |||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||| || || ||||||||  | |  |  |   |  | | |  ||||   |||| | |  | ||   ||    | ||||||  | ||  ||||    ||   ||||                         
----TTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGGTTGgcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G27010.1 (Glycine max), 5'ss of exon 6
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagta--accactaattc-actactattctgatattttc--tgtgtttgtgtacaatattgtgaccttgatttactttcaa--ttag-------------------------
|||| | |||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||| || || ||||||||  | |  |  |   |  | | |  ||||   |||| | |  | ||   ||    | ||||||  | ||  ||||    ||   ||||                         
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTTAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacag

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattag---
||| |||||| ||| ||||||||||||||| || ||||| ||  | |||||||| || || ||  | ||||| |||||||||||||| || || |||||||| || || |  |     |  |  | | |     |  || |  || ||     || |   ||  ||   |  ||||  | |    
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010406|gb|BQ795440.1|BQ795440
EST:     TCAATGAAAATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAAATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|27584274|gb|CB006969.1|CB006969
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110707560|gb|EE084097.1|EE084097
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110392292|gb|EC957611.1|EC957611
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|18458812|gb|BM437090.1|BM437090
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71868753|gb|DT017808.1|DT017808
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|77578922|gb|DV218274.1|DV218274
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32271452|gb|CD720611.1|CD720611
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32271176|gb|CD720335.1|CD720335
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34416028|gb|CF414782.1|CF414782
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         NCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110398676|gb|EC965147.1|EC965147
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|30125564|gb|CB910903.1|CB910903
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71874537|gb|DT023592.1|DT023592
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71871671|gb|DT020726.1|DT020726
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110715382|gb|EE093367.1|EE093367
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32245473|gb|CD711292.1|CD711292
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTGTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110412503|gb|EC978253.1|EC978253
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110703618|gb|EE080622.1|EE080622
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|33410042|gb|CF215669.1|CF215669
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71868631|gb|DT017686.1|DT017686
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010193|gb|BQ795227.1|BQ795227
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110368476|gb|EC932455.1|EC932455
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010553|gb|BQ795587.1|BQ795587
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|161718984|gb|FC068639.1|FC068639
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCC
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCC
EST: gi|110409610|gb|EC975276.1|EC975276
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110395237|gb|EC960891.1|EC960891
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|27580004|gb|CB002699.1|CB002699
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71866632|gb|DT015687.1|DT015687
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110706237|gb|EE081585.1|EE081585
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAA                         GCTGTAATGGCTCTAATAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110709127|gb|EE084314.1|EE084314
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAA                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|87586503|gb|DY474749.1|DY474749
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110366710|gb|EC930626.1|EC930626
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34416554|gb|CF415308.1|CF415308
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|33409969|gb|CF215596.1|CF215596
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|46910239|gb|CN545614.1|CN545614
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71874294|gb|DT023349.1|DT023349
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32245941|gb|CD711760.1|CD711760
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110398076|gb|EC964178.1|EC964178
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010279|gb|BQ795313.1|BQ795313
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|254914253|gb|GR906354.1|GR906354
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110394098|gb|EC958585.1|EC958585
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110709277|gb|EE084597.1|EE084597
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34320347|gb|CF373101.1|CF373101
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|349827438|gb|FQ422306.1|FQ422306
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34415773|gb|CF414527.1|CF414527
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32249585|gb|CD715404.1|CD715404
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|161718168|gb|FC068899.1|FC068899
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110376805|gb|EC941884.1|EC941884
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32248165|gb|CD713984.1|CD713984
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTNAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110417002|gb|EC983022.1|EC983022
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110703405|gb|EE080220.1|EE080220
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|37188704|gb|CF608053.1|CF608053
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110393740|gb|EC959193.1|EC959193
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110393896|gb|EC959460.1|EC959460
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattag

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