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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTGgtgagtcctctgctgcagttttagatggttttagaggttgtcatggcagttatttatattaatttatttgttgtgcttggtttcctctactatgattcaa...

Basic information

species Vitis vinifera
transcript Vv08s0007g06550.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G33030.1 (Glycine max), 5'ss of exon 5
GCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTGgtgagtcctctgctgcagtt-ttagatg-gttttagaggttgtcatggcagttatttatattaatttatttgttgt-gcttggtttcctctactatgattcaa----
|||||||||||||||||| || || || |||||||| ||||||||| |||| || ||||||||||| ||||||||||| || ||||||||| |||  | |      ||| ||||||    || |       || |  |  || |     || |  |     ||   |    ||||| |||   ||   ||      
GCATTACTTGATTGTTTCTGCAGTGACCAATTTATTTGTGAATCTTGTTGGTGTATGGTTCTTCAGAAACTATGCTCGGATTAATCTTGgttagtattttttgaatgttcttagattcacttgatttaacctcttccctcttttgggccttgacctgcagcttacagaaatgtttcttctggaatttgtcttgcag

upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G30140.1 (Glycine max), 5'ss of exon 5
GCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTGgtgagtcctctgctgcagtt-ttagatg-gttttagaggttgtcatggcagttatttatattaatttat--ttgttgtgcttggtttcctct--actatgattcaa--
|||||||||||||||||| || || || |||||||| ||||||||| |||| || ||||||||||| ||||||||||| || |||||  || |||  | |      ||| ||||||     | |       |  |  |  || |     || |  | |  |  |  |     ||||| |||  | | ||  |     
GCATTACTTGATTGTTTCTGCAGTGACCAATTTATTTGTGAATCTTGTTGGTGTATGGTTCTTCAGAAACTATGCTCGGATTAATCTCAgttagtattttttgaatgttcttagattcacctgatttaaccttttccctcttttcagccttgacctgtaataatcattaaaagtttcttctggaatttgccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720919|gb|FC070323.1|FC070323
EST:     GAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG                         TCTACAGGAAAGCAGAAGATATGAACTACCACTCA
genomic: GAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTGgtgagtcctc ... ttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCA