Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGAGAGAACTGTTGAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAGgtttgtctatttttcaaattctgcttttgcctatgcttttcaagtatatgaaataatttgctatggtgtaccagtgagtggtacagaattgggtttaacatatatctattataacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G31040.1 (Glycine max), 5'ss of exon 5
GGCTGAGAGAACTGTTGAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAGgtttg----tctatttttc--------aaattctgcttttgcctatgcttttcaagtatatgaaataatttgctatggtgtaccagtgagtggtacagaattgggtttaacatatat--ctattataacag
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GGCTGAGAGAACTGTTCAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAATCAAGAGTTAATGAAACAGATTGAAATATGCCAGgtttgtgattctttttttttttgaaaaaaaaataatttttgcttatacttgcta-gtaaggcacatattttac-atactcaattagtgga--atgcaaaatttaatgaagtatgttacactcttatgttag
upper sequence: Vv08s0007g05140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G28310.1 (Glycine max), 5'ss of exon 6
GGCTGAGAGAACTGTTGAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAGgtttgt----ctatttttcaaatt---ctgcttttgcctatgcttttcaagtatatgaaataatttgctatggtgtaccagtgagtggtacagaattgggtttaacatatatc--tattataacag
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GGCTGAGAGAACTGTTCAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAATCAAGAGTTAATGAAACAGATTGAAATATGCCAGgtttgtgattctttttttagaataaaattatttgtgcttatacttgcta-gtaaggcacatattttac-atactcaatttgtgga--atgcaaaatttaatgaagcatgttacactcttatgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384051|gb|EC948465.1|EC948465EST: ATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAG GAGGAGAACAAAATCCTGGACAAAATGCATCGGCAAAAGGTTGCAGAGGTC
genomic: ATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAGgtttgtctat ... attataacagGAGGAGAACAAAATCCTGGACAAAATGCATCGGCAAAAGGTTGCAGAGGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGAGAGAACTGTTGAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAACCAAGAACTCATGAAGCAGATTGAAATATGCCAGgtttgtctatttttcaaattctgcttttgcctatgcttttcaagtatatgaaataatttgctatggtgtaccagtgagtggtacagaattgggtttaacatatatctattataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT