Sequence
atgc intronic sequence ATGC exonic sequenceGGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatatttgtgctcttcaactgccttgtaggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g05280.1 (Oryza sativa), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgta--cccccataagtaatat-ttgtgctc---ttcaactgccttgtaggatctctaaggtactttagtagtaatc--ttcagaattcaattcaccttgacgatggaa
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AGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtatacttgcagaaataatatactaagagcaagtttaatagtatagcccactattagctccaattcatctatagtcaatctaatagccaattcat----acaat----
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AC149818.2_FGT001 (Zea mays), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatatttgtgctcttcaactgccttgtaggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa---
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AGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgc-ataaaccagaacaatacttaatatcaaaagcttatc-tctttacccttcat-accattcaaatctaccttccaatagctccagaaaattagattt
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G809265_T02 (Zea mays), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatatttgtgctcttcaactgccttgta--ggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa-
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AGGTCTTGCTTTTGCTGAAGAATCTGGTTGTCTGTTTCTTGAGAGCAGTGCAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttggagaaagatattaggcaccacaa-tgttatgcacttaaaacccttctttctttttaagggatcg--gggattgggcaccaatcgggagccctgc
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G06780.1 (Glycine max), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtac--ccccataagtaatatttgtgctcttcaactgccttgtaggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa-----
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GGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTGAAGgtatgattttagaagcatactatttatttattgacg--cttgatccatcatgcatccatgtacacaacaattttccaa--ttaactggc---ggcagaggaatcatg
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G20970.1 (Glycine max), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatatttgtgctcttcaactgccttgtaggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa-------
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GGGTTTAGCACTTGCCGAGGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGgtatgattttag---aagcatacatttattaattgacgtttgattcatcatacatgtacacaaaacaattttccaa--ttaactggcggtaagg--ggaaccatgaa
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G34330.1 (Glycine max), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatat-ttgtgctcttcaactgccttgtagg------atctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa
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GGGTTTAGCACTTGCTAAAGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACAAGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGgtacagtttttagaagtttgcttcagtgctgttatgtcttgtacataagtcaattttccaattaactgacagtagggtcatgaattaacccaagcctaat-------
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G37020.1 (Glycine max), 5'ss of exon 5
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatattt----gtgctcttcaactgccttgta------ggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa
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GGGTTTAGCACTTGCTAAAGATTTGGGGTGTTTGCTTCTTGAATGTAGTGCCAAAACAAGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGgtacagtttttagaagtttgcttcagtgctgttta--tgtcttgtacataagacaactttccaattaactgacagtagggtcatgaattcacccaagcttaa--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110391637|gb|EC956625.1|EC956625EST: CTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAG ATAATGGAGGTTCCTAGCCTTTTAGAAGAGGGATCGACTGTAGGGAAGAGA
genomic: CTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccat ... ttacttgcagATAATGGAGGTTCCTAGCCTTTTAGAAGAGGGATCGACTGTAGGGAAGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTATTGCTCTTGCAAAAGAGCATGGATGCTTATTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGgtacccccataagtaatatttgtgctcttcaactgccttgtaggatctctaaggtactttagtagtaatcttcagaattcaattcaccttgacgatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT