Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa--
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CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatg-gtttgttgtgtaact-gcattatacttgctgccaaatcaacatatctttttgttctaaatt
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G374973_T01 (Zea mays), 5'ss of exon 6
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagt--tcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa-
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CTACTGACAAAATTGAAATTGACGAGAACACAACTCTGAAGGATTTGGATCTTAATTATTCCTTTTATCTTGAACCTTCCTGGCGTGAGGCTCTACTGAAgtgag-cacgtttt-----ctctaaaaatcatgtttcttatgtgttctgttatgtggtcacattacactcatc--tcagatact---gttcactgttcttcag
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G050309_T01 (Zea mays), 5'ss of exon 6
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagt--tcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa
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CTACTGATAAAATTGAAATTGACGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCCTTTTATCTTGAACCTTCCTGGCGTGAGGCTCTTCTTAAgtgag-catatttt--------ctctagaaatgatgtttatgtgttctgttatgtgacgacattacacttatctcaaaatactgttgattattcttcag---
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 6
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaag-tcacagttgataagctgttatctcgttgccatttacata-ttttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa
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CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaataaat-acaaatagaagggcagataaattactctttgttga-
upper sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 6
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcg---ttgccatttacatattttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa
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CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCAGGAGTCTTTATTGAAgtaaggggtatttacaaaatattttctttgattttgcattttcctttctgttttttgttgttataaaaataaatt-ttattactgagaatataaagaaaaa--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110375016|gb|EC939968.1|EC939968EST: CTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGCTGCTCTATTGAT GCAGATTGAGATTGACAGTAAATTTTTGGAAGCACAGCACATTATGGATTA
genomic: CTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcaca ... ctttatgcagGCAGATTGAGATTGACAGTAAATTTTTGGAAGCACAGCACATTATGGATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa
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