Sequence
atgc intronic sequence ATGC exonic sequenceATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttcatatttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g05720.1 (Oryza sativa), 5'ss of exon 5
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgt-gcttcatatttaaaaataaaatttaagatttga-tattg-tttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
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ATGGAGTTCTAATAGTTACTGGTTCTGCAGACAAAAATTTGAAAATTTGGGGTATGGATTTTGGTGACTGCCATAAGTCTATATTTGCCCACACGGACAGgttatttcttgcccttttgttttctttgtgatttgactgttggcacaatccttacacctttttctcacgtgttcaatttgcag--------------------------------
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AC209858.4_FGT002 (Zea mays), 5'ss of exon 5
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtg-----cttcatatttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
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ATGGAGCTTTGCTAGTTACTGGCTCTGCGGACAAAAATTTGAAGATATGGGGTATGGATTTTGGGGACTGCCACAGGTCTATATTTGCTCACTCAGACAGgtatgatattgcctttttaatcattgtttttcgttttgattataggcagaaccttatattttttggat--gtcttcactttgcag--------------------------------
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G34360.1 (Glycine max), 5'ss of exon 6
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttcatatttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
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ATGGAGATTTAATTGTAACTGGCTCTGCAGATAAAAATATAAAAATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTCGCGCATGCTGACAGgtgctacataatctgtttctcatgatagttgttttttctttatttcttttcttcattggggagcatggattgatctgtatttg-aaatatctaatgcg-atttatgtggcag
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G37050.1 (Glycine max), 5'ss of exon 4
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttcatat-ttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
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ATGGAGATTTAATTGTAACCGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTTGCGCATGCTGACAGgtatataatctgtttctcttgatagttgtaactttct-ttatttcttttcttcattggggaacttggatg--aatctgtatttg-aagtatctaatgcg-atttatgtggcag
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G21540.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttc-atatttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagcc-agttgttacttagcagttgtgaatttctcataagcatttttatggcag
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ATGGAGAGTTGATTGTTACTGGTTCTCAGGACAAAAATTTGAAAATTTGGGGTTTGGATTTTGGTGATTGTCATAAGTCTATCTTTGCTCATGGTGACAGgtacttccataattcgtaccatatttctgaaaatggcataacgta----ctcaataatgtggacccagtttttccttgaatattat-aattttgtgtaagaaaac---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351016863|gb|FQ424290.1|FQ424290EST: GGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAG TGTTATGGCTGTGCAATT-GTTCGCAATACTCATTATGTGTTTAGTGCTGG
genomic: GGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttcata ... tttatggcagTGTTATGGCTGTGCAATTTGTTCGCAATACTCATTATGTGTTTAGTGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGAGATTTGCTTGTCACTGGTTCTGCAGACAAAAATTTGAAGATTTGGGGTTTGGATTTTGGTGATTGCCATAAATCTATTTTTGCTCATGCTGATAGgtgcttcatatttaaaaataaaatttaagatttgatattgtttagagtttagatgatgtaagccagttgttacttagcagttgtgaatttctcataagcatttttatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT