1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTAGTAACTGAACTTGCTGATGTTGGTCGGCAACGGGAGGCTGTGCTGGCAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtcaaagctttaatgaaattggtacagtagagcagtcttgatcattttgtgaaatctgaactgaattatttgggtttggcag
species | Vitis vinifera |
transcript | Vv08s0007g04310.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAEST: gi|27585960|gb|CB008655.1|CB008655
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAEST: gi|71868583|gb|DT017638.1|DT017638
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAEST: gi|110719960|gb|EE095522.1|EE095522
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAEST: gi|30298377|gb|CB975171.1|CB975171
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAAEST: gi|71873110|gb|DT022165.1|DT022165
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
EST: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATG GTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
genomic: CAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtc ... ggtttggcagGTAGGACATATGAATATCACGGAGTTCAAATATAGATATAATCCTCACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGTAACTGAACTTGCTGATGTTGGTCGGCAACGGGAGGCTGTGCTGGCAACACTGTTGCCAGAGGAGCCTGGGAGCTTTAAACAGTTCTGTGAGATGgtatgttgtcaaagctttaatgaaattggtacagtagagcagtcttgatcattttgtgaaatctgaactgaattatttgggtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG