1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGAGTTGGAGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGCgtaagtcacaaacactaagtaaaagacattatggaatccgaaaaaaaatggaattgtccggtcatgtcctgtttgacaaacaggaaaatggcatagtaaa...
species | Vitis vinifera |
transcript | Vv08s0007g04230.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGAGTTGGAGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGC TTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATEST: gi|110718237|gb|EE094838.1|EE094838
genomic: AAAGAGTTGGAGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGCgtaagtcaca ... tgtgttgcagTTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCAT
EST: GGAGCAAAGACGAACCGTGGTCAACTCTCATGGCGAGC TTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCATEST: gi|110720724|gb|EE096897.1|EE096897
genomic: GGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGCgtaagtcaca ... tgtgttgcagTTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCAT
EST: AGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGC TTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCAT
genomic: AGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGCgtaagtcaca ... tgtgttgcagTTCTAATCGATGCAGAGTATGATCCTTTGATTCCCAACGAGGAAAAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGTTGGAGGAGCAAAGACGAACCATGGTCAACTCTCATGGCGAGCgtaagtcacaaacactaagtaaaagacattatggaatccgaaaaaaaatggaattgtccggtcatgtcctgtttgacaaacaggaaaatggcatagtaaa
- - - TTGGAG
- - - TGGAGG
- - - - GGAGGA
- - - - GAGGAG
- - - - - GGAGCA
- - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa